Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1225 |
Symbol | |
ID | 8357341 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 1466633 |
End bp | 1467379 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644963381 |
Product | protein of unknown function DUF1003 |
Protein accession | YP_003120924 |
Protein GI | 256420271 |
COG category | [S] Function unknown |
COG ID | [COG4420] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000330099 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0160942 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAACGT TTATCAGTGA TCTATCCGGG AAAACATACC CTGCTTCTGA GAAGGTTCAT TGCCGGGCTG TCAGCAAGAA TGTCCTGGAG CTTTTACAGA AAGAGCACCC TCAGATTACC AGTAAATCCC ACCTCGCAGT CTCCGAAATA AATGAGTACC GGCAAAAGTA CCTGGAACAC CTGTTTTCAA AGGAAATCGG TGCGTTGACG GAGATGGAGA AAATGGTGCT GGATAAGCTA AAAGAGCATC AGACGCTGAC TGATAAACTG GATGACGGAG AAAACCCGGC CACATTTTCC TTCGGACAGC GGGTAGCCGA TAAGATCGCT TCTTTTGGCG GTAGCTGGAC TTTCATCATT TCCTTCCTGG TATTCATTCT GCTCTGGATG GCGGCCAACA TTTACTGGCT GGCTAACAAG GGCTTTGACC CCTACCCTTT TATCCTGTTG AACCTCATTC TGTCCTGTCT TGCTGCCTTA CAGGCGCCGG TAATCATGAT GAGCCAGAAC CGGCAGGAAG AAAAGGACCG TCAAAGGTCG AAAAACGATT ATATGATCAA CCTTAAATCC GAACTGGAAG TAAGGATCCT GCATGAAAAG ATCGATCACC TGATCCTTCA TCAACAGCAG GACATGATGG AGATACAGCA AACACAGCTG GAAATGCTGA ATGAAGTGAA CCAGGCATTG AAAAAAATCG CGGGAAACGG TAATAACCAT AAACATACGA ATGAAAAACC TGTTTAA
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Protein sequence | MQTFISDLSG KTYPASEKVH CRAVSKNVLE LLQKEHPQIT SKSHLAVSEI NEYRQKYLEH LFSKEIGALT EMEKMVLDKL KEHQTLTDKL DDGENPATFS FGQRVADKIA SFGGSWTFII SFLVFILLWM AANIYWLANK GFDPYPFILL NLILSCLAAL QAPVIMMSQN RQEEKDRQRS KNDYMINLKS ELEVRILHEK IDHLILHQQQ DMMEIQQTQL EMLNEVNQAL KKIAGNGNNH KHTNEKPV
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