Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1116 |
Symbol | |
ID | 8357231 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 1334769 |
End bp | 1336001 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644963271 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_003120815 |
Protein GI | 256420162 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.298595 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAAGA CTTTACAGGA AACAGCCAAA GCACAGGCAC AGCAGGCAGC CAGCAATACC GTATTTTCTA TACTGCTGGC ACTGAGTTTT TCTCACATGA TCAATGACAC GATACAGTCG CTGATCCCTG CAATCTACCC TATTGTAAAA GACTCATTAA AACTCACTTT CAGTCAGATC GGGCTGATCA CACTGACCTA TCAGCTGACG GCATCATTGC TGCAACCACT GGTGGGTCTT TACACGGATA AGCGCCCTCA ACCCTATTCC CTGGCAATCG GAATGGGCTT CACCCTGCTC GGGCTTATCA GTCTGTCGCA GGCGCACCAT TTCTACCTTG TACTGATATC TGTGGCACTT GTAGGTGTAG GCTCTTCAAT CTTTCACCCG GAGGCATCCA GACTTGCCTA TATGGCTTCA GGTGGTAAAC ATGGTATGGC ACAGTCGCTC TTCCAGCTGG GCGGTAATGC AGGTAGTTCC CTGGGCCCTC TACTGGCAGC GATGATCATT GTACCAAAAG GCCAGGGCAG CATCAGCTGG TTTGCACTGG CGGCTTTACT GGCAATTGTA GTCATGCTGA ATATTGCCTC CTGGTACAGG AATAACACAC ATCGCATTCG CAGTAAATCA AAAGGTGTCG ACGATGTACA ACATGTACAG TTGTCAAAAG GGAAAGTGAC ATTTGCCTTG AGCATATTGC TGGTCCTGAT CTTTTCCAAG TACTTCTACA TGGCCAGCAT GACCAGTTAT TACACCTTTT ATCTCATTGA TAAGTTCCAT ATCTCTGTAC AGAGTGCACA GGTCTACCTT TTCATCTTCC TGTTTGCGAT TGCTGCAGGC ACCTTTATCG GCGGCCCTGT AGGCGACCGT ATCGGGAGAA AATATGTAAT CTGGATTTCT ATTCTTGGCG TAGCGCCTTT CTCATTGTTA TTGCCACATG CCAATCTGCT CTGGACATCT GTGCTCAGTG TTTTCATTGG TGTGATATTG TCTTCCGCAT TTTCTGCGAT ACTCGTATAT GCGCAGGAAC TGGTGCCAGG TAAAGTAGGC ATGATCGCCG GACTATTCTT CGGACTGGCA TTCGGCATGG GAGGGATCGG ATCTGCCTTA CTGGGTAAAC TGGCCGACAG CACCAGTATC GCTTATGTAT TCGACGTATG TGCCTATCTG CCGCTGATAG GATTGCTCAC AGGTTTCCTC CCCAACGTAG ATCGTTCAGG TAAAACAAAA TAA
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Protein sequence | MEKTLQETAK AQAQQAASNT VFSILLALSF SHMINDTIQS LIPAIYPIVK DSLKLTFSQI GLITLTYQLT ASLLQPLVGL YTDKRPQPYS LAIGMGFTLL GLISLSQAHH FYLVLISVAL VGVGSSIFHP EASRLAYMAS GGKHGMAQSL FQLGGNAGSS LGPLLAAMII VPKGQGSISW FALAALLAIV VMLNIASWYR NNTHRIRSKS KGVDDVQHVQ LSKGKVTFAL SILLVLIFSK YFYMASMTSY YTFYLIDKFH ISVQSAQVYL FIFLFAIAAG TFIGGPVGDR IGRKYVIWIS ILGVAPFSLL LPHANLLWTS VLSVFIGVIL SSAFSAILVY AQELVPGKVG MIAGLFFGLA FGMGGIGSAL LGKLADSTSI AYVFDVCAYL PLIGLLTGFL PNVDRSGKTK
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