Gene Cpin_1116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1116 
Symbol 
ID8357231 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1334769 
End bp1336001 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content48% 
IMG OID644963271 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_003120815 
Protein GI256420162 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.298595 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAAGA CTTTACAGGA AACAGCCAAA GCACAGGCAC AGCAGGCAGC CAGCAATACC 
GTATTTTCTA TACTGCTGGC ACTGAGTTTT TCTCACATGA TCAATGACAC GATACAGTCG
CTGATCCCTG CAATCTACCC TATTGTAAAA GACTCATTAA AACTCACTTT CAGTCAGATC
GGGCTGATCA CACTGACCTA TCAGCTGACG GCATCATTGC TGCAACCACT GGTGGGTCTT
TACACGGATA AGCGCCCTCA ACCCTATTCC CTGGCAATCG GAATGGGCTT CACCCTGCTC
GGGCTTATCA GTCTGTCGCA GGCGCACCAT TTCTACCTTG TACTGATATC TGTGGCACTT
GTAGGTGTAG GCTCTTCAAT CTTTCACCCG GAGGCATCCA GACTTGCCTA TATGGCTTCA
GGTGGTAAAC ATGGTATGGC ACAGTCGCTC TTCCAGCTGG GCGGTAATGC AGGTAGTTCC
CTGGGCCCTC TACTGGCAGC GATGATCATT GTACCAAAAG GCCAGGGCAG CATCAGCTGG
TTTGCACTGG CGGCTTTACT GGCAATTGTA GTCATGCTGA ATATTGCCTC CTGGTACAGG
AATAACACAC ATCGCATTCG CAGTAAATCA AAAGGTGTCG ACGATGTACA ACATGTACAG
TTGTCAAAAG GGAAAGTGAC ATTTGCCTTG AGCATATTGC TGGTCCTGAT CTTTTCCAAG
TACTTCTACA TGGCCAGCAT GACCAGTTAT TACACCTTTT ATCTCATTGA TAAGTTCCAT
ATCTCTGTAC AGAGTGCACA GGTCTACCTT TTCATCTTCC TGTTTGCGAT TGCTGCAGGC
ACCTTTATCG GCGGCCCTGT AGGCGACCGT ATCGGGAGAA AATATGTAAT CTGGATTTCT
ATTCTTGGCG TAGCGCCTTT CTCATTGTTA TTGCCACATG CCAATCTGCT CTGGACATCT
GTGCTCAGTG TTTTCATTGG TGTGATATTG TCTTCCGCAT TTTCTGCGAT ACTCGTATAT
GCGCAGGAAC TGGTGCCAGG TAAAGTAGGC ATGATCGCCG GACTATTCTT CGGACTGGCA
TTCGGCATGG GAGGGATCGG ATCTGCCTTA CTGGGTAAAC TGGCCGACAG CACCAGTATC
GCTTATGTAT TCGACGTATG TGCCTATCTG CCGCTGATAG GATTGCTCAC AGGTTTCCTC
CCCAACGTAG ATCGTTCAGG TAAAACAAAA TAA
 
Protein sequence
MEKTLQETAK AQAQQAASNT VFSILLALSF SHMINDTIQS LIPAIYPIVK DSLKLTFSQI 
GLITLTYQLT ASLLQPLVGL YTDKRPQPYS LAIGMGFTLL GLISLSQAHH FYLVLISVAL
VGVGSSIFHP EASRLAYMAS GGKHGMAQSL FQLGGNAGSS LGPLLAAMII VPKGQGSISW
FALAALLAIV VMLNIASWYR NNTHRIRSKS KGVDDVQHVQ LSKGKVTFAL SILLVLIFSK
YFYMASMTSY YTFYLIDKFH ISVQSAQVYL FIFLFAIAAG TFIGGPVGDR IGRKYVIWIS
ILGVAPFSLL LPHANLLWTS VLSVFIGVIL SSAFSAILVY AQELVPGKVG MIAGLFFGLA
FGMGGIGSAL LGKLADSTSI AYVFDVCAYL PLIGLLTGFL PNVDRSGKTK