Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1095 |
Symbol | |
ID | 8357209 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 1313448 |
End bp | 1314056 |
Gene Length | 609 bp |
Protein Length | 202 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644963249 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003120794 |
Protein GI | 256420141 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGAGGAGA TCTGGTATAA GGACCTTTCA GATCAGGAGC TCTGGAGCAG GCTGATAGAT AGTGATGAAG GCGCATTGGC TTTCATTTAC GATACATGGT TCACATCACT CTACAAATAT GGAATGAAAA TACAGGCGGA TAGCAGCCTG GTGAAGGATT GTATACACGA TCTTTTTACT TCCTTATGGC ATAGTCGTCA ACAGCTTTCT GTAACTGACA GCATCAAATT CTACCTGTTT GCCAGTCTCA AGCGCAATAT TGTTAAACAT AGCAAGGCGG AGGGGCTTTT TAACCTGTTC AGGCAGCAAC CAGCCGCACA GGAATCACAC ATGCCTTCTT ACGAGGAAAG GCTGATTAAC GAGCAAACCA ATAACGAGCG CAACCTTAAA CTCGCGAAGG TGATTGATCA GTTACCAAAA CGGCAGAAGG AGATCCTGTA CCTACGTTAT TATGAAGGGC TGTCTACCCA GGAAACAGCC GAAATTATGT CACTGAGCGT TAATTCTACA TATGTATTAT TATCGAAAGC ATTGAATTAT CTCAAGAGTC ACAGTGGTGA ATTATTGACT TTATTGGTCA TATCCGGGTA TCGACCCAAA GGTTTCTAA
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Protein sequence | MEEIWYKDLS DQELWSRLID SDEGALAFIY DTWFTSLYKY GMKIQADSSL VKDCIHDLFT SLWHSRQQLS VTDSIKFYLF ASLKRNIVKH SKAEGLFNLF RQQPAAQESH MPSYEERLIN EQTNNERNLK LAKVIDQLPK RQKEILYLRY YEGLSTQETA EIMSLSVNST YVLLSKALNY LKSHSGELLT LLVISGYRPK GF
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