Gene Cpin_1095 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1095 
Symbol 
ID8357209 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1313448 
End bp1314056 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content43% 
IMG OID644963249 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003120794 
Protein GI256420141 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGAGGAGA TCTGGTATAA GGACCTTTCA GATCAGGAGC TCTGGAGCAG GCTGATAGAT 
AGTGATGAAG GCGCATTGGC TTTCATTTAC GATACATGGT TCACATCACT CTACAAATAT
GGAATGAAAA TACAGGCGGA TAGCAGCCTG GTGAAGGATT GTATACACGA TCTTTTTACT
TCCTTATGGC ATAGTCGTCA ACAGCTTTCT GTAACTGACA GCATCAAATT CTACCTGTTT
GCCAGTCTCA AGCGCAATAT TGTTAAACAT AGCAAGGCGG AGGGGCTTTT TAACCTGTTC
AGGCAGCAAC CAGCCGCACA GGAATCACAC ATGCCTTCTT ACGAGGAAAG GCTGATTAAC
GAGCAAACCA ATAACGAGCG CAACCTTAAA CTCGCGAAGG TGATTGATCA GTTACCAAAA
CGGCAGAAGG AGATCCTGTA CCTACGTTAT TATGAAGGGC TGTCTACCCA GGAAACAGCC
GAAATTATGT CACTGAGCGT TAATTCTACA TATGTATTAT TATCGAAAGC ATTGAATTAT
CTCAAGAGTC ACAGTGGTGA ATTATTGACT TTATTGGTCA TATCCGGGTA TCGACCCAAA
GGTTTCTAA
 
Protein sequence
MEEIWYKDLS DQELWSRLID SDEGALAFIY DTWFTSLYKY GMKIQADSSL VKDCIHDLFT 
SLWHSRQQLS VTDSIKFYLF ASLKRNIVKH SKAEGLFNLF RQQPAAQESH MPSYEERLIN
EQTNNERNLK LAKVIDQLPK RQKEILYLRY YEGLSTQETA EIMSLSVNST YVLLSKALNY
LKSHSGELLT LLVISGYRPK GF