| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0989 |
|---|
| Symbol | |
|---|
| ID | 8357103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 1190278 |
|---|
| End bp | 1191711 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644963143 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_003120688 |
|---|
| Protein GI | 256420035 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGATC AACCCGTACA TATATTGATG ATAGACGATG ATGAAGATGA TTTTTATCTC
GTCAGCCAGT TATTACAGGA CATTTCTCCG GGCCAGTACC AGCTTGACTG GGCGCCCACT
TACTCCAAAG CAGTAGAAGA AATAGACAGG AAGGTACATG ATATCTACCT CGCTGACTAC
CGTCTTGGCC CTTATACAGG GATCGATATC CTTCACCATT TTCAGCAACT GGAATACAAA
GCGCCGGTGA TCATGCTGAC GGGTAAAGGT GATTATACGA TTGATAAGGA GGCCATGCAG
GCAGGTGCAT CCGACTACCT TGTGAAAGGG GAAATCAGCG CCGATCTGCT GGAAAGATCT
ATACGTTATG CACTGGATGA AGCGCGTCAC CTGCGGATCA TCGAAGAGAA TGAAAAGAAA
TACTTCGGTG TATTCGAAAA GGCGCATGAC CTGATCATCC TGGCCGACTG CGATAAGAAC
GTCATTGATG CGAACCCTTC TGCTATCAGG ACGCTGCAAT ACAGTAAAGA GGAAATGCTG
GATTTAAATC TCAAGCAGTT ATTCTTCCTG GAAGAACAGA GTAAACATTT CTTTGATCAT
ATCTGCGGAG AAGATTCCAG TCTGCGTACA GAGTATAACT TTGTCACTAA ACACGGAAAG
AAACTGGACG TGATGGTGAG TGCGGTGATG CTGGACGACG CAGAACAGAT ATTCCTGTGC
GTTGTACAGG ATATCACAGA AAGAAAAAGA GAGGAACTGG AAAAACAACA GCAGCAGAAA
TTTGTGGTAA CCGGTCGTAT TGCACGTGTG ATCGCACACG AAGTAAGAAA CCCGCTTACC
AACATATTGC TGGCAGTCAG CCAGTTTAAG GGAGAGCCTG TCAGTATGGA AGATAGCCAG
GTATATGTTG ATATCATCGA ACGTAACTGT ACCCGTATCA ATCAGCTGAT TACCGAACTG
CTGCATTCTA CCAGGATGAT CGAACTGAAT GTGCATCAGC ATGGAGTGAA TGAACTGACC
GATAAGGCAC TCGCACTGGC GCAGGACCGT TTGCAACTGA ATGAGATCAG TGTCAGGAAA
GACTATGTGA AGCAGGATGT GCTGATTCCG GCAGATGAAG ATAAGGTTGT AATTGCACTG
CTGAATATTA TCATCAATGC GGTAGAGGCG ATGACGCCAG GTAAAGGCTT GCTTACTTTA
CAGACGACCA AACAAAGAGA TAAAGCCATT ATTACTATCG GTGATAATGG GCCTGGTATT
CCGGAGGAAA CAAAAAGCCG TTTGTTTGAT CCGTTCTTTA CTAATAAACC TAAAGGAACC
GGTCTGGGCT TAACCAGTAC ACAGAATATC ATTATGAATC ACAAGGGAAC GGTACACGTA
GAAAGTGAAG AGGGAGAAGG AAGTGTATTT ACGATCGTAC TGCCAACCAA CTGA
|
|---|
| Protein sequence | MTDQPVHILM IDDDEDDFYL VSQLLQDISP GQYQLDWAPT YSKAVEEIDR KVHDIYLADY
RLGPYTGIDI LHHFQQLEYK APVIMLTGKG DYTIDKEAMQ AGASDYLVKG EISADLLERS
IRYALDEARH LRIIEENEKK YFGVFEKAHD LIILADCDKN VIDANPSAIR TLQYSKEEML
DLNLKQLFFL EEQSKHFFDH ICGEDSSLRT EYNFVTKHGK KLDVMVSAVM LDDAEQIFLC
VVQDITERKR EELEKQQQQK FVVTGRIARV IAHEVRNPLT NILLAVSQFK GEPVSMEDSQ
VYVDIIERNC TRINQLITEL LHSTRMIELN VHQHGVNELT DKALALAQDR LQLNEISVRK
DYVKQDVLIP ADEDKVVIAL LNIIINAVEA MTPGKGLLTL QTTKQRDKAI ITIGDNGPGI
PEETKSRLFD PFFTNKPKGT GLGLTSTQNI IMNHKGTVHV ESEEGEGSVF TIVLPTN
|
|---|
| |