Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0904 |
Symbol | |
ID | 8357018 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 1077285 |
End bp | 1079225 |
Gene Length | 1941 bp |
Protein Length | 646 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644963058 |
Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
Protein accession | YP_003120603 |
Protein GI | 256419950 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCTAT ATAGTAATTC ACTGACGGAG TATAAGAGGC TGGCCACTTT GGAAGTAAAG GTCGGAGACC TGCTGATTGG AAATAATAAT CCGATACGTA TTCAGACCAT GACCACCACA GATACCATGA ACACCCTCGG TACTGTGGAA CAGGCCATCC GCTGTATCGA AGCGGGCGCC GAACTGGTAC GTATTACCGC TCCCAGCAAA AAGGAAGCGG AAAACCTGCT GCCGATTCGT AATGAGCTGC GCAAAAGAGG TTATACCACT CCCCTGGTGG CTGATATCCA CTTTACCCCT AATGCCGCTG AAATAGCGGC CCGCATCGTG GAGAAAGTGC GTATCAATCC CGGCAACTAC GTTGATAAAA AGAAGTTCGA AACACTCACA TATACTGATG CCGAATACGA AGAGGAAATT GACCGTATCC GCAAACAATT CACCCCACTG GTGAAAATAT GCCAGGAACA CGGCACCGCT ATGCGTATCG GTACCAACCA CGGCTCCCTC AGCGACCGTA TCATGAGCCG CTATGGGGAT ACGCCAATGG GAATGGTGGA AAGTGCGATG GAATTCCTCC GTATTGCGGA AGACCTCAAC TACCGGAACA TCGTCCTGAG TATGAAATCC AGCAACCCGC AGGTAATGGT GCAGGCTTAC CGCCTGCTCG TACATACCAT GCAGGACCAG CTGGGACATT GCTATCCGCT GCATCTGGGA GTAACAGAAG CCGGCGACGG TGAAGACGGC CGTATCAAAT CCGCCGTAGG TATCGGTACT TTACTGGAAG ACGGTATCGG CGACACCATC CGCGTATCCC TCACGGAAGA TCCGGAATTT GAACTGCCTG TATGCCGCGA CCTGGTGAAA CGCTATACCT CCCGCGCCGA TCATACGCCT ATCCCGGCAA TTGAAAACGT GCCTTATTCT CCTTTCGAAT ACAAACGCCG TGAAAGCATT GCGGTAAATA ATATCGGTGG TAAACAGGTG CCTGTTGTTG TTGCTGATTG CAGTAGCACC AGCGGTATCA CACCTGCACA CCTGCTGCCT GTTGGTTATA ATTATAATGC AGATACAGAT AAATGGAATA TCGCAGATGC GGCGGCTGAT TATATCTTCT CCCGCGAACT GCTGTCTTTC GCTTTACCAG GTACGCTGAA AGTAATTGTG CCACACGACA TCTGGAAAGA TGCGGAAGAC AAGGAAAAAT ATATGCCGCT GTTCACCGCG GAAGAATACC TCCTTGCCAC AGACAAGTCT GCGGTGATCA ACTTCATCGA TCATAATACC GGTGTGACCC TCCCGGAGGC ATTACTGTTG CAGATGGCCA ATGATCATAC GATCGTTCTC TGTCTCCACT CCTCCAACGA GCACGCCATG CCGGAAGTAA GACGCACTTT CGTGACCCTG CTGGACCGCC AGATCCAGCA ACCGGTAATC CTGAAATGTT TTGCTGACGC CACCTCCTCT GATGAACACC TGATACACTA TGCGACCGAG ACAGGCGCAT TACTGCTGGA CGGATTCGGT GATGGTACCT GGCTGGTAAG CGAAGCGACC GGTGCACAAG CGCCCGGCCA TGCATTATTG AACAATATCG CCTTCGGTAT CTTACAGGCC ACCAGAACCC GTATATCGAA GACTGAATAT ATTTCCTGCC CATCCTGCGG TCGTACACTG TTTGACCTCC AGGAAACCAC TGCTAAGATC AGAGCTGTCA CCAACCACCT CAAAGGCGTG AAGATCGCGA TCATGGGTTG TATCGTGAAC GGCCCCGGAG AAATGGCAGA TGCCGACTTC GGATACGTCG GCAGCGGTGT AGGCAAGATC ACACTCTACC GTGGTAAGGA AGTCGTAAAA CGAGGACTCA ATAGTGAAGT AGCCGTCGAT GAACTGATCT CTCTCATCAA GGAAAACGGA ATGTGGGTAG AAACTAACTA A
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Protein sequence | MQLYSNSLTE YKRLATLEVK VGDLLIGNNN PIRIQTMTTT DTMNTLGTVE QAIRCIEAGA ELVRITAPSK KEAENLLPIR NELRKRGYTT PLVADIHFTP NAAEIAARIV EKVRINPGNY VDKKKFETLT YTDAEYEEEI DRIRKQFTPL VKICQEHGTA MRIGTNHGSL SDRIMSRYGD TPMGMVESAM EFLRIAEDLN YRNIVLSMKS SNPQVMVQAY RLLVHTMQDQ LGHCYPLHLG VTEAGDGEDG RIKSAVGIGT LLEDGIGDTI RVSLTEDPEF ELPVCRDLVK RYTSRADHTP IPAIENVPYS PFEYKRRESI AVNNIGGKQV PVVVADCSST SGITPAHLLP VGYNYNADTD KWNIADAAAD YIFSRELLSF ALPGTLKVIV PHDIWKDAED KEKYMPLFTA EEYLLATDKS AVINFIDHNT GVTLPEALLL QMANDHTIVL CLHSSNEHAM PEVRRTFVTL LDRQIQQPVI LKCFADATSS DEHLIHYATE TGALLLDGFG DGTWLVSEAT GAQAPGHALL NNIAFGILQA TRTRISKTEY ISCPSCGRTL FDLQETTAKI RAVTNHLKGV KIAIMGCIVN GPGEMADADF GYVGSGVGKI TLYRGKEVVK RGLNSEVAVD ELISLIKENG MWVETN
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