Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0810 |
Symbol | |
ID | 8356923 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 972371 |
End bp | 973303 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644962963 |
Product | Xylose isomerase domain protein TIM barrel |
Protein accession | YP_003120509 |
Protein GI | 256419856 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3622] Hydroxypyruvate isomerase |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0113296 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAGAA GAAAATTCCT TCAGCAGAGC ACATTGGCAG GTCTCTCTAC GCTGGCAGCA GGCAGTGCCG CAGCAGCAAC CCATCATTCC TTCAATGAGA AGGAGAAAGA ACAGGCAGGC AAAACCTTCA ATCTCAACTA TGCCCCTCAT GACGGTATGT TTAAAAACAG TGGCGGCGAC AGCTTCCTCG ATCAGATACA GTTCATGTAT GATCAGGGCT TCCGTTCCAT TGAAGACAAC GGCATGATGA AAAGAGATAC GGCAGAACAG GAGAAGATCG GTAAACTGCT CAGCAAACTC GGTATGCAGA TGGGGGTATT TGTGATCGAT GCGGGCGACA ACTGGAAGGT TTCTCTGACC AGCGGCAAAC AGGAGTTTAA AGACGCCTTT GTAAAAGAAT GTAAACGGGC ACTTGAAACC GCCAAACGTG TCAATGCCAA ATGGGCGACC GTAGTGCCGG GCTATTTTGA ACGTAACCTG CCGATCGGCG TACAAACGGC ACATGTAATC GAAGCCTTCC GCGCAGGAGC AGGCGTACTG GAAAAAGAAG GACTGGTAAT GGTGATGGAG CCCCTGAGCG ACAATCCTGA CCTGTTTCTG CGTACCGCAG AACAAAGTTA TGGCATCTGT AAAGCGGTCA ACAGCCCAAG CTGTAAAATA CTCTACGATA TCTACCATAT GCAGCGCAAT ACCGGCAACC TGATCCCTGT AATGGACATG TGCTGGGATG AAATTGCCTA TATCCAGATC GGTGATAATC CTGGCCGTAA GGAACCGACC AGCGGTGAGA TCAACTACAA AAATATTTTC AAACACCTGC ACAAGAAAGG TTTCAAAGGT ATCCTGGGCA TGGAACATGG TAATGCCAAT CCGGGAAAAG AAGGCGAACA GGCGCTCATA AAGGCATACC GCGAAAGTGA CGATTTTCTG TAA
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Protein sequence | MERRKFLQQS TLAGLSTLAA GSAAAATHHS FNEKEKEQAG KTFNLNYAPH DGMFKNSGGD SFLDQIQFMY DQGFRSIEDN GMMKRDTAEQ EKIGKLLSKL GMQMGVFVID AGDNWKVSLT SGKQEFKDAF VKECKRALET AKRVNAKWAT VVPGYFERNL PIGVQTAHVI EAFRAGAGVL EKEGLVMVME PLSDNPDLFL RTAEQSYGIC KAVNSPSCKI LYDIYHMQRN TGNLIPVMDM CWDEIAYIQI GDNPGRKEPT SGEINYKNIF KHLHKKGFKG ILGMEHGNAN PGKEGEQALI KAYRESDDFL
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