Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0328 |
Symbol | |
ID | 8356433 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 386552 |
End bp | 387049 |
Gene Length | 498 bp |
Protein Length | 165 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644962474 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003120028 |
Protein GI | 256419375 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCCCCTC CAAAAGAAGA TAAGCTCTTT CTGTCGGTCA TCGAACAGCA TAAGGGAATT ATCTATAAAA TAGCCAATTC CTACTGCCAC CATACAGAAG ACAGAAAAGA TCTCATACAG GAGATCATCT TCCAGCTATG GCGATCATTT GACCGGTATA ATGATCAGTA TAAGTATTCT ACCTGGCTAT ACAGAATAGC CCTGAACGTG GCGATCTCCT TCTATCGTAA AGACAGTAAG CGCAACAGCG CACACGAACT CACCGCCGAT ATTATCGTCC TTACAGAAGA AACAGCAGAT ATGGAACAGC TGCAATTATT GCAACGCTTC ATTCATGAAC TGCCGGAACT GGACAGAGCT ATCATGTTGT TGTACCTGGA AGAGAAAAGC TATAAGGAAA TAGCCGATAT ACTGGGATTA ACAGAAACCA ACATCGCAAC AAAGATCAAC CGCATCAAAA GCAAACTGAA AAACAAATTT TCCACCATTC ATACCTGA
|
Protein sequence | MAPPKEDKLF LSVIEQHKGI IYKIANSYCH HTEDRKDLIQ EIIFQLWRSF DRYNDQYKYS TWLYRIALNV AISFYRKDSK RNSAHELTAD IIVLTEETAD MEQLQLLQRF IHELPELDRA IMLLYLEEKS YKEIADILGL TETNIATKIN RIKSKLKNKF STIHT
|
| |