| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0144 |
|---|
| Symbol | |
|---|
| ID | 8356243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 176298 |
|---|
| End bp | 177116 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644962288 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003119848 |
|---|
| Protein GI | 256419195 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAGA TCATTTTCAT AACAGGCGCA TCCAGAGGTT TCGGTAAATC ATGGGCTGAA
GCCCTGCTGA AACGCGGTGA TAAAGCTGCC GCCACAGCAA GAGATACCAA CTCACTTAAT
GACCTGGTGA AACAATACGG TGACGCTATC TTACCGTTAC AACTCGACGT ACATAGCAGA
GAAGCAGCTT TTGCTGCCAT CCAAAAAGCA AAGGCACATT TTGGCCGTAT TGATGTAGTC
ATCAATAACG CTGGTTTCGG TCTGCAGGGA GCGATAGAAG AAACAACAGA AGAACAGGCG
CGTAAACAGA TGGAAACAAA CTTCTTCGGC TTATTATGGG TAAGTCAGGC TGCCTTACCT
GTGCTACGAG AACAGAAAAG CGGACATATT ATCCAGGTAT CCAGTTTCCT CGGACATGCG
ACATTACCAA CCTTAGGTGT TTACACCGCA TCCAAATTTG CGGTCGAAGG ACTTAGCGAA
ACACTGGCAG CTGAAGTAAA ACCATTCGGC ATCAATGTAT CACTGGTAGA ACCTAACGGT
TATGCGACAG AATTCTGGGG CGGTTCCTCT TATGCACAAA CCGAACACAC ACCATTGTAC
GAACCATTAA GGGAAGCCAT TAAGACAAAT GTAAAACCGG AGCATTTCGG AAAAATGGAG
GCTACCAATG AGGCATTATT GAAACTGATA GATAGCCCGA ATCCTCCTTT ACGCCTCTTT
ATGGGTAAAG TAGCGTTACC TGTCGTAAAG CAGGTGTACG AACAAAGATT GTCCCTTTGG
GAAGAATGGA ACGATGTAGC AGTAGCTGCA CACGGATAA
|
|---|
| Protein sequence | MSKIIFITGA SRGFGKSWAE ALLKRGDKAA ATARDTNSLN DLVKQYGDAI LPLQLDVHSR
EAAFAAIQKA KAHFGRIDVV INNAGFGLQG AIEETTEEQA RKQMETNFFG LLWVSQAALP
VLREQKSGHI IQVSSFLGHA TLPTLGVYTA SKFAVEGLSE TLAAEVKPFG INVSLVEPNG
YATEFWGGSS YAQTEHTPLY EPLREAIKTN VKPEHFGKME ATNEALLKLI DSPNPPLRLF
MGKVALPVVK QVYEQRLSLW EEWNDVAVAA HG
|
|---|
| |