| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0098 |
|---|
| Symbol | |
|---|
| ID | 8356195 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 117936 |
|---|
| End bp | 118697 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644962242 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003119804 |
|---|
| Protein GI | 256419151 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00697344 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGTAT TAGAGAAACT CAATACCAAT CTGCTGCAAC AGAACTTTGC CGGTCAGGAT
ACGGCAGCTG CACTGGCATA TTGCCAGTCA ATTGCTGCAA TGTATGCCCG GCTGGAAAAT
GCCATCAGCG TCTTAAGTGA TCTCCAGAAC AATAGAAGTT ACATTTATAC AGGTAAGATA
GCGCCTGCCC TGGGCATTGC TGCGCATCCC GCTATGAAAG AGATCGATTC TATCTGGGAA
GGAGAGATCT TCAATAGGAT CAAACCGGAT CATCTGCTGG AAAAGCACTT ACTGGAACTG
AAATTCTTCC ACCTGGTGGG TGGTGTACCT GTTGCGGAAC GCTGCGATTA CCAGGTGAAC
AGTTATTTAC AGATGCAGGA TGCTGCCGGC GACTATGTCC CTGTCCAGCA CCGGATGTTT
TATCTGCACA GTAATAGCAA CGGGAGCATT AATCTGGCTT TGTGCCTGTA TAACTTTGCC
GGCAATCCAC ATCCTGCTGA CCAATACCAG GGTATGATCG TCAATACCAG TACGGGGAAG
GTGATTACAA CGGATAACAA ACGCTTCAGC AAGATTCTCT CTTTCCGGGA AAAACAATTG
CTGCAGCTGA TCAGAAATGG CAAAAGCAGT AAGGAAATAG CAACCCAGCT GTCTATCAGT
ATAAACACCG TTAGCCGGCA CCGCCAGAAC ATACTGGAGA AACTGCACGT AAAGAACTCC
ATAGAAGCCT GCCGGATCGC CGAAGCAATT GAGTTATTAT AG
|
|---|
| Protein sequence | MNVLEKLNTN LLQQNFAGQD TAAALAYCQS IAAMYARLEN AISVLSDLQN NRSYIYTGKI
APALGIAAHP AMKEIDSIWE GEIFNRIKPD HLLEKHLLEL KFFHLVGGVP VAERCDYQVN
SYLQMQDAAG DYVPVQHRMF YLHSNSNGSI NLALCLYNFA GNPHPADQYQ GMIVNTSTGK
VITTDNKRFS KILSFREKQL LQLIRNGKSS KEIATQLSIS INTVSRHRQN ILEKLHVKNS
IEACRIAEAI ELL
|
|---|
| |