| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0097 |
|---|
| Symbol | |
|---|
| ID | 8356194 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 117171 |
|---|
| End bp | 117821 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644962241 |
|---|
| Product | protein of unknown function DUF1349 |
|---|
| Protein accession | YP_003119803 |
|---|
| Protein GI | 256419150 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3506] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000978689 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAGAA TCATTTTTGG GCTGCTCATG ATCACCGGTA TGAAGGCCGC TTCCGCGCAA
ACGCTAGAGA AAATGCAATG GTATAACGAA CCTGCTGAAT GGAAGATCAA TAACAAAACA
TTTACCATGT TTGTTACTCC GCAAACGGAT TACTGGCGTA TTTCTCACTA CGGATTTACG
GTTGATGATG CGCCTTTCTA TTACACAACG TATGGTGGTG AATTTGAAGT GAAAGTGAAA
CTAACAGGCA ACTACAAAGC CAGATTTGAT CAGATGGGAC TGATGATCAG AACAGATCAC
CAGAACTATA TTAAAAGCGG TGTGGAATTC GTAGATGGTA AACTCAATGT CAGCACCGTT
GTAACACATA CAACAAGCGA CTGGAGTGTT ACTCCGCTGG ATAAAGTACC CCCTTTCATC
TGGATCAAAG CAATCAGGAA ACTGGATGCT GTAGAGTTCT ACTATTCATT TGATGATAAG
AACTATATCA TGACGCGTAA TGCGCCTTTA CAGGACAACC ATCCGGTAAT GGTGGGACTG
ATGGCTGCAT CTCCCGACGG ACAAGGATTT GAAGCTAAAT TTGAGGAGTT TACAGTAAAA
CATCTTGCTG ATCAGCGTCG TGTGATCTGG TTGAAAAATC ACGCAGAATA A
|
|---|
| Protein sequence | MKRIIFGLLM ITGMKAASAQ TLEKMQWYNE PAEWKINNKT FTMFVTPQTD YWRISHYGFT
VDDAPFYYTT YGGEFEVKVK LTGNYKARFD QMGLMIRTDH QNYIKSGVEF VDGKLNVSTV
VTHTTSDWSV TPLDKVPPFI WIKAIRKLDA VEFYYSFDDK NYIMTRNAPL QDNHPVMVGL
MAASPDGQGF EAKFEEFTVK HLADQRRVIW LKNHAE
|
|---|
| |