| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3113 |
|---|
| Symbol | |
|---|
| ID | 5743199 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 3807982 |
|---|
| End bp | 3809040 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 641294213 |
|---|
| Product | 2-nitropropane dioxygenase NPD |
|---|
| Protein accession | YP_001560208 |
|---|
| Protein GI | 160881240 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCTAA AACCACTGAT TATAGGTAAT TTAAAATCAA GATTTCCAAT AATTCAAGGC
GGTATGGGTG TTGGAATTAG CCTTAGCCGT CTTGCTGGGA ATGTAGCAAA AGAAGGTGGA
ATTGGTATTA TTTCCACTGC GCAGATTGGA TTTGAAGAGG AAGACTTCTA TACCAATCCA
GTGAATGCGA ATCTTCGTGC GATAGAGAAG CATTTGATTA AGGCCAAAGA AATTTCTGAA
AATGGAATTG TCGGTGTTAA TATTATGGTA GCATCGCAAA ATTATAAGGA ATATGTCATT
TGTGCAGCGA AAAGTGGAGC AGACGTAATT ATTTCAGGTG CGGGGTTACC CATCTCATTA
CCAGAGTATG TAGAAGGATT TAATACCAAG ATAGCACCAA TTGTGTCTAG TGTAAAAGCG
GCTAATGTAA TTTTAAAGAT GTGGGATAGA AAATATCATC GAACTGCGGA TTTTCTAGTT
ATTGAAGGAC CAAAAGCTGG AGGTCACTTA GGATTCTCTT TGGAAGAGTT AGATGGATTT
GAAAACTGGA ACTATGAAGA AGAAATTAAG AAAATCATAG ACTGCAAAAA GAGCTATGAA
GAGAAATATC AGGTTAAAAT ACCAGTGATT GTAGCAGGCG GAGTTTTTGA TCATAATGAT
ATTATACATT GCTTATCCCT AGGAGCAGAC GGTGTTCAAA TAGCATCGAG ATTTGTTGTA
ACGGAGGAAT GCGATGCTTC GCAGGCGTAT AAGAATGAGT ATTTGAAGGC GAAGAAAGAA
GACATAGAAA TTGTTCTAAG TCCTGTTGGA ATGCCAGGAA GAGCAATTCA CAATAAGTTC
TTAGAAAAAA TAAAAACAGA ACGAGAAAGA ATTGATCGTT GTTTACGATG TATTGTAACC
TGCAATCCAA GCAATACACC ATACTGTATT ACGAAGGCCT TGATTAATGC AGTTAAAGGC
AATATTGACA ATGCGTTATT ATTCTGCGGT TCAGAAGTTT ATCGTTTGAA AGAAATGACT
ACCGTTAAGA GTTTAATGAG GGAATTAGTA ATAGGTTAG
|
|---|
| Protein sequence | MELKPLIIGN LKSRFPIIQG GMGVGISLSR LAGNVAKEGG IGIISTAQIG FEEEDFYTNP
VNANLRAIEK HLIKAKEISE NGIVGVNIMV ASQNYKEYVI CAAKSGADVI ISGAGLPISL
PEYVEGFNTK IAPIVSSVKA ANVILKMWDR KYHRTADFLV IEGPKAGGHL GFSLEELDGF
ENWNYEEEIK KIIDCKKSYE EKYQVKIPVI VAGGVFDHND IIHCLSLGAD GVQIASRFVV
TEECDASQAY KNEYLKAKKE DIEIVLSPVG MPGRAIHNKF LEKIKTERER IDRCLRCIVT
CNPSNTPYCI TKALINAVKG NIDNALLFCG SEVYRLKEMT TVKSLMRELV IG
|
|---|
| |