Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_3054 |
Symbol | |
ID | 5743380 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | - |
Start bp | 3734795 |
End bp | 3735646 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 641294155 |
Product | spermidine synthase |
Protein accession | YP_001560150 |
Protein GI | 160881182 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0421] Spermidine synthase |
TIGRFAM ID | [TIGR00417] spermidine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACTTT GGTATACAGA TCAACACACA AAAGACGTAC GCTTTTCTAT CAAAATGAAA GAGCAGCTAG TTAGTGTAGA AAGTGAGTTT CAACGGATCG ACATCATCGA AACCTACGAA TACGGACGTG TACTTGTATT AGATGGGGAA ATGATGATAA CGGAAAAGGA TGAATTTATC TATCATGAGA TGATAACGCA TGTTCCTATG GCAGTTCATC CGAATATCCG TAATGTCCTT GTGATTGGAG CAGGAGATGG TGGAACGATT CGGGAGCTAA CAAAATACGA TACGATAGAG CATATCGATA TGGTGGAAGT TGACAAAGAA ATTGTACAAG TTTGTAGAGA ATATATGCCT TTTACGGCTT GTAAGTTAAA TGATAAAAGA GTATCGATGC ATTTTGAAGA AGGATTACGT TTTGTCCGTG GAAAACAAGA TGAATACGAT TTGATTATAG TTGATTGTGC TGATCCATTC GGACCAGCAG AAGGTTTATT TACAAGAGAA TTTTACGGAA ACTGTTATAA GGCACTTCAT GATGACGGAA TCTTAATCAA TCAGCACGAA AGCCCATTTT ACAATGAGCA TTCCGGAAGT GTACAAAAAG CACATCGTCA TATTACAGCT GTATTTCCGT TAAGCACAGT GTATCAATGT CATATCCCTT CCTACCCATC TGGACACTGG TTGTTTGGAT TTGCATCAAA GAAATATGAC CCGATTAAGG ACTTAAACGA CAAGAAATGG AACGAGCTTA AACTACCTGT TCGATATTAC AATACCGATT TGCACAAAGG ATGTTTCTAT CTACCAAATT ACGTAAAGGA GTTGTTAGGC AGCTATGAAT AA
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Protein sequence | MELWYTDQHT KDVRFSIKMK EQLVSVESEF QRIDIIETYE YGRVLVLDGE MMITEKDEFI YHEMITHVPM AVHPNIRNVL VIGAGDGGTI RELTKYDTIE HIDMVEVDKE IVQVCREYMP FTACKLNDKR VSMHFEEGLR FVRGKQDEYD LIIVDCADPF GPAEGLFTRE FYGNCYKALH DDGILINQHE SPFYNEHSGS VQKAHRHITA VFPLSTVYQC HIPSYPSGHW LFGFASKKYD PIKDLNDKKW NELKLPVRYY NTDLHKGCFY LPNYVKELLG SYE
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