Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_2356 |
Symbol | |
ID | 5745415 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | - |
Start bp | 2909309 |
End bp | 2910250 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 641293446 |
Product | RluA family pseudouridine synthase |
Protein accession | YP_001559456 |
Protein GI | 160880488 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.105918 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAACA TAAAAACATG CTGTATAGAC AGTGAGTATG AGGATGAACG CATTGATAGT TTTCTTGCAG AATTTGAGGA AGGTATTTCT CGTTCCTATA TTCAGAAGTT AATAAAAGAT TCCCTTGTGA AGATCAATGG TAATGTGATT AAGGCAAATT ACCGTTTAAA AGAAGGGGAT ATACTAACTT ATGAAGTTCC TCAACCCGTA TCATTAGAGA TAGCAGCAGA GAATATTCCC CTTGATATTT TATATGAAGA TGAGGATATT ATCGTAATCA ATAAACCAAA AGGATTAGTT GTTCATCCGG CGGCAGGTCA CTATTCTGGT ACCTTAGTAA ATGCACTATT ATATCATTGT AAGGATAGAC TATCCGGAAT AAATGGAGTG ATGAGGCCAG GAATCGTTCA TCGTATTGAT ATGAATACGA CTGGAGTATT GGTTGTTTGT AAAAATGATA AATCTCACCA ATCGATAGCA GAACAATTAA AGGTACATTC CATTACAAGA AAATATGAAG CGCTTGTCTA TAATTCCTTT AAACAAACGG AAGGAACAGT AGATGCGCCT ATTGGAAGAC ATCCAGTAGA TCGTAAGAAG ATGGCAATCA ACCATAAGAA TGGGAAGAAT GCAGTCACGA ACTATCGTGT ATTGGAGAAT TTTAACCTTG GATATGTACA CAACCAAGGT TATGCTCATA TTGAATGTAC ATTAAAAACA GGACGTACTC ACCAAATCCG CGTTCATATG GCTAGTTTAC ATCACCCTCT ATTAGGTGAT GATGTGTATG GACCGGAGAA AGATAAATTT CATCTTGAAG GGCAGGCTTT ACATGCCAGA GTTTTAGGAT TCCTTCATCC AACTACGCAG GAATATATGG AATTTGAGGC TCCATTGCCC GAATACTTTC AGCAATTGAT TGAAAAATTG AGGTGTAACT AA
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Protein sequence | MENIKTCCID SEYEDERIDS FLAEFEEGIS RSYIQKLIKD SLVKINGNVI KANYRLKEGD ILTYEVPQPV SLEIAAENIP LDILYEDEDI IVINKPKGLV VHPAAGHYSG TLVNALLYHC KDRLSGINGV MRPGIVHRID MNTTGVLVVC KNDKSHQSIA EQLKVHSITR KYEALVYNSF KQTEGTVDAP IGRHPVDRKK MAINHKNGKN AVTNYRVLEN FNLGYVHNQG YAHIECTLKT GRTHQIRVHM ASLHHPLLGD DVYGPEKDKF HLEGQALHAR VLGFLHPTTQ EYMEFEAPLP EYFQQLIEKL RCN
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