Gene Cphy_2056 details

Gene Information

• Locus tag: Cphy_2056
• ID: 5743756
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: +
• Start bp: 2538743
• End bp: 2540677
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 641293153
• Product: hydrogenase, Fe-only
• Protein accession: YP_001559163
• Protein GI: 160880195
• COG category: [R] General function prediction only
• COG ID: [COG4624] Iron only hydrogenase large subunit, C-terminal domain
• TIGRFAM ID: [TIGR02512] hydrogenases, Fe-only

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0000410653
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAACA ACAAAACTTT TATGTTAAAT TCTCCTTTAG GATCTATCTT TCCAGGAAAT 
CAAGAAGAAG GTCTAAAAGA AATATCCAAA AATGATAAAA ACCTAGTTGC AGTATCCGGT 
AAGATAAAGA AACCCGGTAT TGTTACTTTA ACAAGTAATA CGACTCTACG TGATATCATT 
GAACTTTCTG GTGGTATGTT AAATGATAAA CCTTTAAAAG CTGCACAGCT TGGTCTACCT 
TTTGGAGGTT TTTATACGAA GAAAGATATT GATCGTCAAA TAACTCCAGA CTCCTTTGAG 
GAAGGAATAA GTCATTCAAT TATTATTCTA TCGGAAGAGG ATTGTATCAT ACAGTATGCA 
AAGTTTTATA TTGACTTTTT GTTAGGTAAA ATCAATGGAG GCTATATCGA TCATTATATT 
CCCGCACTGC CAGAGATACT TCAGATGGTT AAAGTTTTAA ATCGTATTAG CAAGGGAAGA 
TCTAATATGA GAGATATTTT TCTATTAAGG GAACTCTCAC AAACAGTAAA AGAAAAGGTA 
CATCAAAAAT ATAATCTCAT CGAAGAAGTG ATAATCTACT TCTATGATGA GATTAAGGAC 
CATGTGGAAG ATAACCGATG CTACACCCTA CAGTGTAATA ATCTAACGAA ATTAACGATT 
ATGGACAACT GTATCGGATG TGATAAATGT ACAAAAGTAT GTCCGGTGGA CTGTATTGTT 
GGAGACTTTA AAGAACAGCA TTATATTGAT TACACAAGGT GTACCCATTG TGGTGCTTGT 
CTTAGCACCT GTCCTGTAAA TGCTATAACG TCAGGAAATA ATTCTATCTT ATTTTTAAGA 
GATTTAGCAA CACCAAATAA AATTGTAATT ACACAAATGG CTCCTTCCGT TCGTGTTGCA 
ATCGGTGAGG CATTTGGATT TGAAACCGGT GCTAATGTAG AAAAAAAGAT TGCAGCAGGG 
CTTCGAAAAC TAGGTGTTGA TTATGTATTC GATACCACCT GGGCAGCCGA CTTAACGATT 
ATGGAAGAAG CGAATGAACT TGCAGAAAGG GTGAAGAGAT ATCTAGAAGG CGATAAGGAA 
GTAAAACTCC CAATCCTTAC ATCCTGTTGC CCAGCTTGGG TAAAATTCAT TGAACAGAAC 
TACGGAGATA TGTTAGATGT GCCCTCCACT TCAAAATCAC CGATGCAAAT GTTTGCTGCA 
GTTGCAAAAG ACCTATGGGG TAAGGAGAAA GGACTTAGCA GAGAACAGAT TACTTCCGTC 
GCTATTATGC CATGCATCGC GAAAAAATAT GAAGCTTCAA GGCCTGAGTT TTCCAGGGGG 
CTTAATTATG ATGTGGATTA CGTTATTACA ACTACAGAGC TCATAGACAT CTTTAAGAAA 
TCTAATATTG ACTTAAGTCA GTTAGAAGAT GAAGAAATCG ATCAGGTGAT GGGAGAATAT 
ACCGGAGCAG GTATTATTTT CGGCCGAACC GGCGGTGTAA TTGAAGCTGC TACTAGAACT 
GCGGTTGAAT TAATCACAGG GCAGCGTGTT GATAACATTG AATTTACCAG TCTACGTGGC 
TTTGATGGAT TTCGAAGCTG TGAATTAACG GTAGGAGACT TAACATTACG AATTGGTGTA 
ACCTATGGAC TTAAGGAAGC CAGAAAGATG TTAGATAAGA TTCGCTCAGG AGAGGAATTT 
TACCATGCAA TAGAAATTAT GGCATGTACC GGTGGCTGTA TCGGAGGCGG CGGACAACCT 
AGGGCTAAAA AAAGAGAGGA AACAATTAAA AGTAGGATGG AGGGTCTGAA TGAAATTGAT 
CGTTCCTTAC CACTTCGCAG ATCCAATGAT AACCCAGCGG TACTCGCAAT TTATGAAAAA 
TTCTTAGATT ATCCGCTTAG TAATAAGGCT CAGGAATTAC TTCATACCAG ATATTTTGTT 
AAGAGGAAAA AATAA 

 

Protein sequence

MNNNKTFMLN SPLGSIFPGN QEEGLKEISK NDKNLVAVSG KIKKPGIVTL TSNTTLRDII 
ELSGGMLNDK PLKAAQLGLP FGGFYTKKDI DRQITPDSFE EGISHSIIIL SEEDCIIQYA 
KFYIDFLLGK INGGYIDHYI PALPEILQMV KVLNRISKGR SNMRDIFLLR ELSQTVKEKV 
HQKYNLIEEV IIYFYDEIKD HVEDNRCYTL QCNNLTKLTI MDNCIGCDKC TKVCPVDCIV 
GDFKEQHYID YTRCTHCGAC LSTCPVNAIT SGNNSILFLR DLATPNKIVI TQMAPSVRVA 
IGEAFGFETG ANVEKKIAAG LRKLGVDYVF DTTWAADLTI MEEANELAER VKRYLEGDKE 
VKLPILTSCC PAWVKFIEQN YGDMLDVPST SKSPMQMFAA VAKDLWGKEK GLSREQITSV 
AIMPCIAKKY EASRPEFSRG LNYDVDYVIT TTELIDIFKK SNIDLSQLED EEIDQVMGEY 
TGAGIIFGRT GGVIEAATRT AVELITGQRV DNIEFTSLRG FDGFRSCELT VGDLTLRIGV 
TYGLKEARKM LDKIRSGEEF YHAIEIMACT GGCIGGGGQP RAKKREETIK SRMEGLNEID 
RSLPLRRSND NPAVLAIYEK FLDYPLSNKA QELLHTRYFV KRKK