| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1009 |
|---|
| Symbol | |
|---|
| ID | 5743949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 1274886 |
|---|
| End bp | 1276127 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 641292116 |
|---|
| Product | histidine--tRNA ligase |
|---|
| Protein accession | YP_001558128 |
|---|
| Protein GI | 160879160 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0124] Histidyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00442] histidyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAA GTACAGTAAA AGGCATGAAT GAATATTCGC CAAATGAAGT TTTATTAAGA
GATTATTTAC AGAATGTAAT TTTAACAACA TACCAATCTT TTGGATTCCA AAAGATTAGC
ACGCCAATCA TGGAAGATAT TGAAAATCTT GAAAATAGTG AGGGTGGAGA AAATTTAAAA
CTATTATTTA AAGTATTAAA ACGCGGTGAT AAATTAGAAA AAGATTTATC AGATGGAAAC
TATGAAAATC TGGCTGATTT AGGATTGCGA TACGATTTAA CTCTGCCGTT ATGTCGCTAT
GTGGCTAACA ATAAATTTAA GTTACCAACC CCATTTCGTT GTATCCAAAT AGATAGGGTA
TACCGGGCGG AGCGTCCGCA GAAAGGGAGA TTGCGAGAAT TTGTACAATG TGATATTGAT
ATCATTGGAA CTGATTCATG CAATGCAGAA ATTGAACTTA TTACAACAAC TGCCAAAGCC
TTGGGGGAAA TTGGAATACA GGATTTTGCT GTAAAAATTA ATAATCGTAA ACTGTTAAAT
ACGTTACTTC TGTCTCTTGG TTTTACAAAA GATCAGCTGG AAGGTGTTTG TATCTCCTTT
GATAAAATGA GCAAAATTGG AATTGGAGGA GTGAAAACCG AGTTAATGCA GAAAGGTTGT
GATGAAGATG CAATTACTAA ATTCATGAAC CTTCTATCCA ATATGCCAAT TTCATTAGAT
ACCATGCGTG AAATCTGCGG TGAGAATGAA GACATTAGAA GTCTTGAAAC GATTATTAAT
TCATGCAGTA GAATTTCGAA TGACCAATAT CGTATGGAAT TTGATTTATC TTTGGTAAGA
GGTCAGAGTT ATTATACAGG GGCAGTGTTT GAAATTGTAA GTAATGACTG GAATGGATCT
ATTGCTGGAG GCGGTAGATA TGATAATCTG ATTGGAAAGT TCACAAATGA GGTGATACCT
GCGGTAGGTT TTAGCATTGG TTTTGAGCGT ATTTATCAGA TGTTATTAGA AAATAATTAT
CAAATTCCAA ATATGAAAAA ACGTTTGGCC ATAGTATATA AAAAAGAAGC AATCGTTGAA
GTGTTACAGG AAGCCGCAAA GTACCAACAG GACTTTGATA TAGTTTTATA TGAAGAAAAA
TCTAATGTTC GTAAGCAGAT TGGTAAGATA AAGACGCAAT GTGATGCATA TCTTATTCTT
AATCAATCTG AGGGAATGGT ATTTTTCTCT GAAGAGGTTT AA
|
|---|
| Protein sequence | MKISTVKGMN EYSPNEVLLR DYLQNVILTT YQSFGFQKIS TPIMEDIENL ENSEGGENLK
LLFKVLKRGD KLEKDLSDGN YENLADLGLR YDLTLPLCRY VANNKFKLPT PFRCIQIDRV
YRAERPQKGR LREFVQCDID IIGTDSCNAE IELITTTAKA LGEIGIQDFA VKINNRKLLN
TLLLSLGFTK DQLEGVCISF DKMSKIGIGG VKTELMQKGC DEDAITKFMN LLSNMPISLD
TMREICGENE DIRSLETIIN SCSRISNDQY RMEFDLSLVR GQSYYTGAVF EIVSNDWNGS
IAGGGRYDNL IGKFTNEVIP AVGFSIGFER IYQMLLENNY QIPNMKKRLA IVYKKEAIVE
VLQEAAKYQQ DFDIVLYEEK SNVRKQIGKI KTQCDAYLIL NQSEGMVFFS EEV
|
|---|
| |