| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_0234 |
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| Symbol | |
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| ID | 5745102 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | - |
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| Start bp | 289502 |
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| End bp | 290617 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 641291324 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001557360 |
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| Protein GI | 160878392 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000417606 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAAGAAC AAGTAAATAC CTTTGAAGCA CGCCTGAAAG AATTAATTGC ATTTGCGAAT
GATAATAAAG GTGTCATCGA AGTTGATAAA GTGAATGATT TCTTTAAAGA ATTAAATCTG
AATGTACGTC AGATTGATAA AATATATGAG TACCTTGAGG CAAACAATAT TGTTGTGCTT
AATCCGACGG ATGAGGACGA GCCTAACGAG GATGCCCTAC TCGAATTAGA AGATGATTCT
GATATGATAG GTGATACAGA AGATCTATCT GCTATGACGT CAACCATTTC TGACGACCCA
GTAAAACAAT ATCTTAAAGA AATCGGTAGC TACCCTCTTC TCTCTGTAGC AGAAGAAATT
GAGCTTGCTA AAAAAATTGA AGCTGGAGAT AATATGGCAA AGCAGATCCT TGCCGAATCA
AACCTTCGAT TAGTAGTCAG CATCGCAAAA CGATATGTAG GAAGAGGACT TTCTTTCCTT
GATTTAATTC AAGAAGGAAA TTTAGGACTT ATCAAAGCAG TTGACAAATT CGATTATAAC
AAAGGTTATA AATTTAGTAC CTACGCAACT TGGTGGATTC GTCAAGCAAT CACAAGATCC
ATTGCTGACC AGTCTCGTAC CATACGTATA CCGGTACATA TGTCAGAAGT TATCAATAAG
ACATATCGAG TATCAAGAAA TCTTCTCCAA GAATTAGGAC GTGAGCCTAG CGAACAGGAA
CTTGCAGATG CAATGAATCT CCCTATTGAA AAGGTACGTG AAATTCTTAA GGTATCTGCA
GACCCAATCT CCCTCGATAC ACCAATCGGT GAAGAGGACG ATAGCCATCT TGGTGATTTC
ATCAAAGATG ATACAATTAT GGGACCAGAA GATGCTGCAT CCTATGCCGT TTTACAAGAC
CAGATATCAA AACTACTAGA TACATTAACC GAGCGTGAAC AACGAGTTTT AATACTACGT
TTTGGTTTAC AAGATGGAAG AAGTCGTACT TTAGAAGAAG TTGGTAAAGA ATTTAACGTT
ACCAGAGAAC GTATCCGTCA GATTGAAGCA AAAGCACTTC GTAAATTAAG ACATCCAAGT
CGCGCACGGA TGTTAAAGGG TTATGAACTA AACTAA
|
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| Protein sequence | MEEQVNTFEA RLKELIAFAN DNKGVIEVDK VNDFFKELNL NVRQIDKIYE YLEANNIVVL
NPTDEDEPNE DALLELEDDS DMIGDTEDLS AMTSTISDDP VKQYLKEIGS YPLLSVAEEI
ELAKKIEAGD NMAKQILAES NLRLVVSIAK RYVGRGLSFL DLIQEGNLGL IKAVDKFDYN
KGYKFSTYAT WWIRQAITRS IADQSRTIRI PVHMSEVINK TYRVSRNLLQ ELGREPSEQE
LADAMNLPIE KVREILKVSA DPISLDTPIG EEDDSHLGDF IKDDTIMGPE DAASYAVLQD
QISKLLDTLT EREQRVLILR FGLQDGRSRT LEEVGKEFNV TRERIRQIEA KALRKLRHPS
RARMLKGYEL N
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