Gene Cphamn1_2117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphamn1_2117 
Symbol 
ID6375811 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium phaeobacteroides BS1 
KingdomBacteria 
Replicon accessionNC_010831 
Strand
Start bp2293328 
End bp2293939 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content49% 
IMG OID642684608 
Productsurface antigen msp4 family protein 
Protein accessionYP_001960507 
Protein GI189501037 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3637] Opacity protein and related surface antigens 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000016508 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00195302 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAAAAGT CATTCAGTTT CTTTATCGGA ACCCTTCTGG TCTTTCTCTT TTCCTCACCG 
CTTGCGCATG CGGCAGCTCC TTATGCGAGT TTATCGGCAG GGCTTGGATT TTTAACCAAC
TCCAGTGCGG ATGACGGCGT TGTAAAAGTT GAAGATGTAT GGGGGTTCAA CACCGGCTAT
CTGGTAAACG GTGCAGTCGG TCTTGACGGT GATATGTACC GTGTGGAGGC CGCTATCGGC
TACCAGTCTA ACAGCATCGA CACACTCTTA GGCATCGAGA TACCGGGTGA CTGGAACTGG
AGAGTTTCCA TTCTCTCATT CATGGCCAAT GGCTATCTTG ACATTGAGTC AGAGGGTAGC
ACTGTTACTC CTTATCTTAC GGCAGGTGCC GGTATCGCAA ATGTCAGCTT CAATGATGGT
ATAACGAGTG ACGACGATAC TGTATTTGCC TATCAGCTTG GTGCAGGCAT CGGTTTCGAG
GTTTCAGAAG ATACTACGGT TGATGTTGGC TATCGTTACT TCGCCACTTC TGATGTTGAC
CCGGGCGGTT ACGGCGTTGA CTATAGTATG GCGAGTCACA ATGCTGTGGT AGGTGTACGG
TTTGCATTCT GA
 
Protein sequence
MKKSFSFFIG TLLVFLFSSP LAHAAAPYAS LSAGLGFLTN SSADDGVVKV EDVWGFNTGY 
LVNGAVGLDG DMYRVEAAIG YQSNSIDTLL GIEIPGDWNW RVSILSFMAN GYLDIESEGS
TVTPYLTAGA GIANVSFNDG ITSDDDTVFA YQLGAGIGFE VSEDTTVDVG YRYFATSDVD
PGGYGVDYSM ASHNAVVGVR FAF