Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_2117 |
Symbol | |
ID | 6375811 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | - |
Start bp | 2293328 |
End bp | 2293939 |
Gene Length | 612 bp |
Protein Length | 203 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 642684608 |
Product | surface antigen msp4 family protein |
Protein accession | YP_001960507 |
Protein GI | 189501037 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3637] Opacity protein and related surface antigens |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000016508 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00195302 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAAAAAGT CATTCAGTTT CTTTATCGGA ACCCTTCTGG TCTTTCTCTT TTCCTCACCG CTTGCGCATG CGGCAGCTCC TTATGCGAGT TTATCGGCAG GGCTTGGATT TTTAACCAAC TCCAGTGCGG ATGACGGCGT TGTAAAAGTT GAAGATGTAT GGGGGTTCAA CACCGGCTAT CTGGTAAACG GTGCAGTCGG TCTTGACGGT GATATGTACC GTGTGGAGGC CGCTATCGGC TACCAGTCTA ACAGCATCGA CACACTCTTA GGCATCGAGA TACCGGGTGA CTGGAACTGG AGAGTTTCCA TTCTCTCATT CATGGCCAAT GGCTATCTTG ACATTGAGTC AGAGGGTAGC ACTGTTACTC CTTATCTTAC GGCAGGTGCC GGTATCGCAA ATGTCAGCTT CAATGATGGT ATAACGAGTG ACGACGATAC TGTATTTGCC TATCAGCTTG GTGCAGGCAT CGGTTTCGAG GTTTCAGAAG ATACTACGGT TGATGTTGGC TATCGTTACT TCGCCACTTC TGATGTTGAC CCGGGCGGTT ACGGCGTTGA CTATAGTATG GCGAGTCACA ATGCTGTGGT AGGTGTACGG TTTGCATTCT GA
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Protein sequence | MKKSFSFFIG TLLVFLFSSP LAHAAAPYAS LSAGLGFLTN SSADDGVVKV EDVWGFNTGY LVNGAVGLDG DMYRVEAAIG YQSNSIDTLL GIEIPGDWNW RVSILSFMAN GYLDIESEGS TVTPYLTAGA GIANVSFNDG ITSDDDTVFA YQLGAGIGFE VSEDTTVDVG YRYFATSDVD PGGYGVDYSM ASHNAVVGVR FAF
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