Gene Cphamn1_2006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphamn1_2006 
Symbol 
ID6375699 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium phaeobacteroides BS1 
KingdomBacteria 
Replicon accessionNC_010831 
Strand
Start bp2157969 
End bp2158793 
Gene Length825 bp 
Protein Length274 aa 
Translation table11 
GC content49% 
IMG OID642684497 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001960397 
Protein GI189500927 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.157395 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGGAAAGC TCGACAACAA AGTTGCAATC ATAACCGGTT CTACAAGAGG TATCGGCAAA 
GCTATCGCGG CTGCATTTGT CCGGGAAGGC GCTCGGGTTG TCATAACTTC AGGACGCAGG
TCCAGCGTCG ACAAGGCGTT GCAGGAATTT CCCGAAGAGA ATGTCTACGG TCACGTATGT
GATGTATCGG ACTATGACGA GGTAGAAAAA CTGGTGATGT CAACCGTTGA AAAGTTTGGC
GGACTTGACA TCTTTATCAA CAACGCGGGA ATATCCGACA CGTTTTATAA CATTACCGAC
AGTGATCCCC GTGAGTGGGG CCGGATTATC GATACTAACC TGAAGGGGAC ATACTACGGA
TGCCGGGCGG CACTCAACTA TTTTCTTGAG ACAGGCCGGC CCGGCAGGAT TATCAACATG
GCCGGTTCAG GCACCGATAA AAAATCAAAT ACACCCTTTA TCAGTGCGTA CGGTTCATCG
AAAGCAGCGA TCGCACGATT CACCTTTGCC GTCGCGGAGG AATACCGGCA AACCCCTGTT
TCCATCATGC TCCTGCATCC CGGTCTTGTC CGGACAGAAA TGATACAATC CGTTTTCCGG
ACGCAGGAAA TGGAACGTCA GCAGAAAACC TTTCAGAAAA TAAAAGATAT CTTTTCCCAA
CCCCCATCTG TCGCGGCATC GCTGGCCGTG AAAATGTGCA GCGACACGGG TGGGTGCAAA
AGCGGCGACT ACCTGTCTGC ACTTGACGGT AAACGAAAAA AATGGCTTCT GTTTTCCTAT
CCGTTTCGTA AACTGTTGAA GAAAATAGAT TATTCAAGCT ACTAA
 
Protein sequence
MGKLDNKVAI ITGSTRGIGK AIAAAFVREG ARVVITSGRR SSVDKALQEF PEENVYGHVC 
DVSDYDEVEK LVMSTVEKFG GLDIFINNAG ISDTFYNITD SDPREWGRII DTNLKGTYYG
CRAALNYFLE TGRPGRIINM AGSGTDKKSN TPFISAYGSS KAAIARFTFA VAEEYRQTPV
SIMLLHPGLV RTEMIQSVFR TQEMERQQKT FQKIKDIFSQ PPSVAASLAV KMCSDTGGCK
SGDYLSALDG KRKKWLLFSY PFRKLLKKID YSSY