Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_2006 |
Symbol | |
ID | 6375699 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | - |
Start bp | 2157969 |
End bp | 2158793 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 642684497 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001960397 |
Protein GI | 189500927 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.157395 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGGAAAGC TCGACAACAA AGTTGCAATC ATAACCGGTT CTACAAGAGG TATCGGCAAA GCTATCGCGG CTGCATTTGT CCGGGAAGGC GCTCGGGTTG TCATAACTTC AGGACGCAGG TCCAGCGTCG ACAAGGCGTT GCAGGAATTT CCCGAAGAGA ATGTCTACGG TCACGTATGT GATGTATCGG ACTATGACGA GGTAGAAAAA CTGGTGATGT CAACCGTTGA AAAGTTTGGC GGACTTGACA TCTTTATCAA CAACGCGGGA ATATCCGACA CGTTTTATAA CATTACCGAC AGTGATCCCC GTGAGTGGGG CCGGATTATC GATACTAACC TGAAGGGGAC ATACTACGGA TGCCGGGCGG CACTCAACTA TTTTCTTGAG ACAGGCCGGC CCGGCAGGAT TATCAACATG GCCGGTTCAG GCACCGATAA AAAATCAAAT ACACCCTTTA TCAGTGCGTA CGGTTCATCG AAAGCAGCGA TCGCACGATT CACCTTTGCC GTCGCGGAGG AATACCGGCA AACCCCTGTT TCCATCATGC TCCTGCATCC CGGTCTTGTC CGGACAGAAA TGATACAATC CGTTTTCCGG ACGCAGGAAA TGGAACGTCA GCAGAAAACC TTTCAGAAAA TAAAAGATAT CTTTTCCCAA CCCCCATCTG TCGCGGCATC GCTGGCCGTG AAAATGTGCA GCGACACGGG TGGGTGCAAA AGCGGCGACT ACCTGTCTGC ACTTGACGGT AAACGAAAAA AATGGCTTCT GTTTTCCTAT CCGTTTCGTA AACTGTTGAA GAAAATAGAT TATTCAAGCT ACTAA
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Protein sequence | MGKLDNKVAI ITGSTRGIGK AIAAAFVREG ARVVITSGRR SSVDKALQEF PEENVYGHVC DVSDYDEVEK LVMSTVEKFG GLDIFINNAG ISDTFYNITD SDPREWGRII DTNLKGTYYG CRAALNYFLE TGRPGRIINM AGSGTDKKSN TPFISAYGSS KAAIARFTFA VAEEYRQTPV SIMLLHPGLV RTEMIQSVFR TQEMERQQKT FQKIKDIFSQ PPSVAASLAV KMCSDTGGCK SGDYLSALDG KRKKWLLFSY PFRKLLKKID YSSY
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