Gene Cphamn1_1702 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphamn1_1702 
Symbol 
ID6375389 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium phaeobacteroides BS1 
KingdomBacteria 
Replicon accessionNC_010831 
Strand
Start bp1845001 
End bp1845636 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content41% 
IMG OID642684195 
ProductRNA polymerase sigma factor RpoE 
Protein accessionYP_001960101 
Protein GI189500631 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000456019 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCGAGTT CCTCAGACAA TAAAAACGCT CCCGAGAAAA AAAGCATACT TTCCGAAAAG 
GACAAAATCA AGCAGAAAGA GTTCCAGGAG GAAGCTATTG AGCACATAAA CGCGCTCTAT
AATTACGCCT TACATCTCAC GATGAATCCA AGCGATGCTC ATGATCTGGT CCAGGAAACC
TACCTCAAAG CGTATAAATT TTTCAGTTCT TTTGAAAAGG GAACAAACTG CAAGGCATGG
CTGTTTAAAA TCCTTAAGAA TAATTATATC AACAAATTCA GGAAAAACGC GCGTGAACCG
GGAAAGGTTG ATTATGATCT GATCAAGGAT TTTTATCATT CAATCAAGGA CAGCCAAAGC
GAAAGCGAGG ACCTTAATGC AGGATATTTG CGTTCATTGA TGCATGACGA GGTATATCAG
GCCATGAACT CATTACCGGA AGAATTCAAA GAAGTAATAC AACTCTGTGA TATAGAAGGT
TTTACTTACG AAGAGATAGC AAACATGGTG GAAAGCCCGA TAGGAACTGT GCGATCAAGA
CTGTACAGGG GCAGAAAAAT ATTACGGAGC AAGTTAACGG AATTCGCAAG CAAATACGGG
TACAACACAG AAAACGAGGA ACCCGGGGAA CAGTAA
 
Protein sequence
MSSSSDNKNA PEKKSILSEK DKIKQKEFQE EAIEHINALY NYALHLTMNP SDAHDLVQET 
YLKAYKFFSS FEKGTNCKAW LFKILKNNYI NKFRKNAREP GKVDYDLIKD FYHSIKDSQS
ESEDLNAGYL RSLMHDEVYQ AMNSLPEEFK EVIQLCDIEG FTYEEIANMV ESPIGTVRSR
LYRGRKILRS KLTEFASKYG YNTENEEPGE Q