| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_1663 |
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| Symbol | |
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| ID | 6375349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium phaeobacteroides BS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010831 |
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| Strand | - |
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| Start bp | 1792158 |
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| End bp | 1793576 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 642684157 |
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| Product | type I secretion membrane fusion protein, HlyD family |
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| Protein accession | YP_001960063 |
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| Protein GI | 189500593 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.131459 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGATA CAAGAACAAA AGAGGGCTTT GAACGCCTCG GAAGGTTTAT CAAGTCGTCC
GGTGAAAAAG GACGCCGATA TGTCGATATG TTTTTTCAGC GGTGGATTCC TCTTGAGGAG
GAGAAGCCTC TTGACTGGGT AGGTGATGCC GACTGGGCGC AGCTTCAGCA GGAACCGGTG
AGAGCCCGCG CGCTTCTGAA AATCTTCGGA ATAACGCTGG CGCTGCTGTT GCTCTGGGCG
GCGGTCGCCC CGCTTGATGA AGTGACCAGA GGGATGGGGA AGATTATTCC GTCTTCAAGA
CTACAGGTGA TCGAGTCTCT GGACGGAGGG GTTGTCGAGA AGATTCTTGT GCAGGAAGGC
GTGGTGGTGA AGTCGGGTGA TCTTCTGATG CGTATCGATC CGACCCGGTA TACCTCTTCA
CTGCAGGAGC GTCAGTATGA AGTGCTGAGC CTGATTGCCC GTGCCTCACG TTTACGCGCA
CTTGCTGAAG ATTCGCCCCT TGATCTTCCT GAAGACAAAC TCAAAGATGT TCCGCAGATA
GTGGAGCATG AAAAGCACCT GTATGAGGAA AGCCTTAAAG GGTTTGACTC ACAGATGATC
ATTATGAAGG AGAAGCTTTC CCAGAGAGAG CATGAACTTG AAGAGGTAGA GGCCCGGCAG
ATTCAGGCCC GACAGGCATA CGGGCTTGCT GCTCAGGAGT TGAACAGAAC GCAGCCGCTG
CTCAAGTCCG GCGCCGTGTC TGAAGTGGAG GTTATCAGGC TTCGACGGGA TGTCGCGAAC
GCAAAAGGTG AACGCGATGC AGCCATAGCA AGAAAAGCCA CCCTCGAGCG ATCGGTTGAG
GAGGCAAGGG AGCAGATTCA GGAAACGGAG CTGAACACCA GGAACGAGTG GCGTGAGGAG
CTCGCCGATG TCTTGAGCAA AATATCAAGC ATGAGCCAGG GAGCCAAAGG TCTGGCTGAC
CGTGTTGAAC GAGCCGAGAT CAAGGCTCCG GTTAACGGAA CGGTCCAGCG GCTCTATATC
AATACTCTCG GAGGTGTGGT CAAACCTGGG GGAAGAGTGG CCGATATCGT TCCCCTGGAT
GACAGCCTTG AAGTCGAAGT CAAGGTTTCA CCAAAGGATA TCGCGTTTGT GCACCCCGGC
CAGAAGGCCC TTGTCAAGCT GACCGCATAT GAATTTTCTA TTTACGGCGG ATTGAAAGCT
GATGTCTATC AGATAAGTCC TGACACGGTT ACTGACGAGG AGGGCAACAC GTTTTATCTT
GTCCGGGTGA AAACCCCTGC AGCATCGATA CGCGAAGGTC TGCCGATTAT ACCGGGAATG
ATGGCCCAGG TCGATATTCT GACGGGAAAA CGCACGGTCC TCGCCTATCT TCTGAAGCCC
ATACTTCGGG CTACGTCCAA CGCTATGAAG GAGAGGTGA
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| Protein sequence | MIDTRTKEGF ERLGRFIKSS GEKGRRYVDM FFQRWIPLEE EKPLDWVGDA DWAQLQQEPV
RARALLKIFG ITLALLLLWA AVAPLDEVTR GMGKIIPSSR LQVIESLDGG VVEKILVQEG
VVVKSGDLLM RIDPTRYTSS LQERQYEVLS LIARASRLRA LAEDSPLDLP EDKLKDVPQI
VEHEKHLYEE SLKGFDSQMI IMKEKLSQRE HELEEVEARQ IQARQAYGLA AQELNRTQPL
LKSGAVSEVE VIRLRRDVAN AKGERDAAIA RKATLERSVE EAREQIQETE LNTRNEWREE
LADVLSKISS MSQGAKGLAD RVERAEIKAP VNGTVQRLYI NTLGGVVKPG GRVADIVPLD
DSLEVEVKVS PKDIAFVHPG QKALVKLTAY EFSIYGGLKA DVYQISPDTV TDEEGNTFYL
VRVKTPAASI REGLPIIPGM MAQVDILTGK RTVLAYLLKP ILRATSNAMK ER
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