| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_1662 |
|---|
| Symbol | |
|---|
| ID | 6375348 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | - |
|---|
| Start bp | 1790934 |
|---|
| End bp | 1792079 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642684156 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_001960062 |
|---|
| Protein GI | 189500592 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.127475 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCTGA TAAAAGCGGT ACTTCTGTTA TCAAGCGCAA TGACCGTGAT GGCCGGTTCT
ATTATTTCAC CGGCTCTTCC GGAGATCAGC CGTCATTTTT CAGGAGCAGG TGACGCGGTT
TTCACGAAAC TGGTACTGAC CATGCCGGCT ATCATGATTG CCGTATGCGC ACCGCTTGCT
GGTCATCTGT CAGATATGTT CGGGCGCAGG AAATTGCTGA TCTTTTCGCT TTTTCTTTAT
GGCGTTTCAG GGTTCAGCGG TTTTTTTCTG GACGATCTTT TCCTTCTTCT TGTCAGTCGC
GCAATTCTCG GGATTGGTGT CGGGGGTATC ATGAGCGCGG CAACCGCGCT CATAGGTGAC
TTGTTTTCAG GAGATGAACG TGCCGGGTTC ATCGGTCTTC AGTCCGGTTT CATGTATATC
GGGGGGGTTG TGCTGGTGCT GTTTGGGGGG CTGCTTGCGG AGATCAGCTG GAGAGCACCA
TTTACCGCCT ACCTTTCCGC TTTTGCTGTT CTCGCGATGG CAATTGTCGG GCTCAAAGAG
CCGGATAAGC GATTGAAGAG CGACAAGGCA ATTGAGTCTG TGGAGGAGTC GCCTGTGCCG
TTACCCGCGG TAAGCGTGAT CTATGTGCTG GTTTTTCTCT TGATGATCTT TTATTATATG
GTGCTGGTGC AGGTACCGTT TATTCTTCAG GAGCGTTTTG GTTTTGGCAG CGCCATGACC
GGTCTTGCCA TTTCGGCATC CGCACTTGCC GGAGCACTCT CTTCTCTCTC TTATCCGTTG
ATCAAGCGCA GACTGTGTTA CAGGAACATC TATGCTCTCG GGTTCGGATT TGTGGCGACC
GGATATCTTT TGATAGGCTC TGCGGACAGT TATCCGCAGT TATTGGCCGG TCTTGCATGT
GCAGGATTCG GTAACGGTAT GATGATGCCT AATGGCAGCT TCTGGCTTAT GGAGGTGGTT
CCTGAAAGAG TCAGGGGGAA GGCTGTAGGC GGCTTTACGG GAATGATTTT TCTCGGGCAG
TTCCTTTCTC CGGTTGTTAT GGCTCCGGTG GTGTTGTTTT GTACCCTGAG CGGCGCATTT
CTCTTTGCCG CGACAGCAAT GTGGATGTTG GTTTTGTTTT TACTGGTTCA GAGGTTTATC
TCATAA
|
|---|
| Protein sequence | MRLIKAVLLL SSAMTVMAGS IISPALPEIS RHFSGAGDAV FTKLVLTMPA IMIAVCAPLA
GHLSDMFGRR KLLIFSLFLY GVSGFSGFFL DDLFLLLVSR AILGIGVGGI MSAATALIGD
LFSGDERAGF IGLQSGFMYI GGVVLVLFGG LLAEISWRAP FTAYLSAFAV LAMAIVGLKE
PDKRLKSDKA IESVEESPVP LPAVSVIYVL VFLLMIFYYM VLVQVPFILQ ERFGFGSAMT
GLAISASALA GALSSLSYPL IKRRLCYRNI YALGFGFVAT GYLLIGSADS YPQLLAGLAC
AGFGNGMMMP NGSFWLMEVV PERVRGKAVG GFTGMIFLGQ FLSPVVMAPV VLFCTLSGAF
LFAATAMWML VLFLLVQRFI S
|
|---|
| |