Gene Cphamn1_1000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphamn1_1000 
Symbol 
ID6374669 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium phaeobacteroides BS1 
KingdomBacteria 
Replicon accessionNC_010831 
Strand
Start bp1074070 
End bp1074753 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content51% 
IMG OID642683501 
ProductABC transporter-related protein 
Protein accessionYP_001959424 
Protein GI189499954 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00286652 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCGAAA CACTTATCAA AATGCGCTCG CTCTGCAGGT TCTATGAAAT GGGTGACCAG 
ATTGTCAAGG CGCTTGACAG CGTTGACCTC AACTTCAACC GTAACGAGTA TGTTTCGATC
ATGGGGCCGT CAGGAAGCGG GAAATCGACG CTGATGAATA TTATCGGGTG TCTCGATACT
CCCTCGTCGG GCTCTTATGA ACTCAATGGA CAACGTGTCT CGGAAATGGA TGATGACGAG
CTTGCCAGAA TACGGAACAG CGAGATCGGC TTTGTTTTTC AGACATTCAA CCTGCTGCCC
CGGCTCAACT GTCTGAGAAA TGTAGAGCTT CCTCTCATTT ATGCGGGAGT CAACGCCGAA
GAACGCTACG ACCGGGCGCT CGCCGCTCTG GACAGGGTCG GACTCGGCGA CCGGGTCAAC
CATAAACCTT CTGAACTTTC CGGCGGCCAG ATCCAGAGAG TAGCCATTGC ACGGGCTCTC
ATCAACAACC CCTCCCTTAT TCTTGCAGAC GAACCGACAG GGAATCTCGA TACGTCCACC
AGCAAAGATA TCATGTCCAT TTTCAGTGAG TTGTCCGATG CGGGAAATAC CATCATACTT
ATCACCCATG AAGAGGAAAT CGCGAAGTAT ACCCGCCGTT CCATCAGTTT ACGTGACGGC
ACAATAGAAC GTGACACGCA GTGA
 
Protein sequence
MTETLIKMRS LCRFYEMGDQ IVKALDSVDL NFNRNEYVSI MGPSGSGKST LMNIIGCLDT 
PSSGSYELNG QRVSEMDDDE LARIRNSEIG FVFQTFNLLP RLNCLRNVEL PLIYAGVNAE
ERYDRALAAL DRVGLGDRVN HKPSELSGGQ IQRVAIARAL INNPSLILAD EPTGNLDTST
SKDIMSIFSE LSDAGNTIIL ITHEEEIAKY TRRSISLRDG TIERDTQ