Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_0477 |
Symbol | |
ID | 6374141 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | + |
Start bp | 500598 |
End bp | 501362 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642682995 |
Product | pseudouridine synthase |
Protein accession | YP_001958922 |
Protein GI | 189499452 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAA AGAGCAGTAA CGCTCATGTA GAAACCCCGG GTGCAGCTGT CAGGATCAAC AAGTACCTCG CGCTTTGCGG CATAGCATCG AGACGTGCCG CTGACCGGCT GGTTGAGTCC GGAGAGGTTA TGGTAAACGG CCGCATCATG ATGAAGAAGG GAGCAACGGT TCGACCGGGG GTCGATGAAG TTGTCGTTAG TAATCGGTTA CTTGCTTTGC CTGAAGAAAA AAAAGTGTAT ATATTGCTCA ACAAGCCCAG GAATTACATT ACAACCAGCA GTGATGAGAA AGAGAGGGAA ACGGTTCTTG ATCTGGTGGA TGTGAGGGAA CGTGTCTTTC CTGTAGGCCG TCTTGACAGG AAAACAACCG GTATGCTTCT TCTGACCAAT GACGGTGCAT TGGCTCATCG GTTGATGCAC CCATCATCGG AAGTTGAAAA GGAGTATCTG GCAGAGCTGG AAACCCCTTT TTCTGAAAAG GATCTGCCGT CGTTGACTGG CGGGATGCGG CTGAAAGATA CGGGTGAAAA GACCAGTCCC TGCAAGGGAA AAATTATGCA GGGAGGGTTA CGGGTTCTCG TGACCATTCA TGAGGGGAAA AATCACCAGG TGAGAAGGAT GTTCCGTTCT TTGGGCTATG ATGTTAAGAG ACTTGACAGA ACGGCATATG CCGGCTTGCG GGCAGGTAAG CTTCGCAGAG GCGAGTGGCG ATATGCCACA TCGAAAGAGG TTGAGCAGCT CATGTTGACA AGCTCCGGCC TCTGA
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Protein sequence | MKKKSSNAHV ETPGAAVRIN KYLALCGIAS RRAADRLVES GEVMVNGRIM MKKGATVRPG VDEVVVSNRL LALPEEKKVY ILLNKPRNYI TTSSDEKERE TVLDLVDVRE RVFPVGRLDR KTTGMLLLTN DGALAHRLMH PSSEVEKEYL AELETPFSEK DLPSLTGGMR LKDTGEKTSP CKGKIMQGGL RVLVTIHEGK NHQVRRMFRS LGYDVKRLDR TAYAGLRAGK LRRGEWRYAT SKEVEQLMLT SSGL
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