Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_0424 |
Symbol | rho |
ID | 6374086 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | + |
Start bp | 448179 |
End bp | 449468 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 642682941 |
Product | transcription termination factor Rho |
Protein accession | YP_001958870 |
Protein GI | 189499400 |
COG category | [K] Transcription |
COG ID | [COG1158] Transcription termination factor |
TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00623615 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0254414 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGAATA ATTCAGTTTC AAAAGGTCTG GACATCAACA TGCTCCAGAA GAAGAAGGTG CATGAGTTGA ATACGTTAGC GAAAGAGTTT GGTGTAGTCA ATGCCGGTTT ACGAAAAGAA GAGCTGATAT ACAAAATTAT CGAGGCGCAG TCCCAGAAAG GAAGCAGTAC GGAAAGCGGG CAGGTGATGG TCAATACGGG TGTTCTTCAG GTTATTCCCG AGGGCTACGG TTTTCTTCGT TCCTCCAACT ACAACTACCT CTCATCTCCG GACGATATTT ATGTGTCGCC ATCACAGATC AAGCGGTTTA ACATGAGAAC CGGGGACACG GTGTCCGGTC AGGTCCGGGC GCCAAAAGAA GGGGAACGAT TTTTCGCGTT GCTGAAAATC AACACCATTG ACGGCAAAGA TCCCGAGATT ACCAGAGAGA GACCGTTTTT TGAGAACCTT ACCCCGCTGT TTCCCCGTGA ACGTTTGATT CTTGAAACTT CACAGAATGA GCATTGCGGG AGAATTATGG ACATCTTTAC ACCGATCGGT AAGGGACAGA GAGGTGTGAT CGTGGCTCAG CCCAAGACCG GTAAGACCAT GTTTCTCCAA ACGGTGGCAA ATGCAATCAT TAAAAACCAT CCTGAGGTAT ATCTCATTGT TCTGCTTATA GATGAACGTC CTGAAGAGGT TACGGACATG CAGCGAAGTG TTCCTGCGGA AGTTGTCAGT TCTACGTTCG ATGAAGACCC GGAGCGTCAT GTACAGGTTG CCGATATGGT GCTTGAAAAG GCAAAACGTC TTGTCGAAGT CGGTAATGAT GTCGTTATAC TGCTTGACTC TCTCACCCGT CTGGCAAGAG CTCACAATAC CATTATTCCT CATTCCGGCA AGATTCTTTC CGGAGGCATC GACGCAAATG CGTTGACGAA ACCAAAAAGA TTTTTCGGCG CTGCAAGAAA TATTGAAGAA GGCGGCAGCC TGACCATCAT AGCAACCGCA CTTGTCGATA CAGGTTCAAG GATGGACGAT GTTATCTTTG AAGAGTTCAA GGGAACGGGT AACATGGAGC TTGTTCTTGA CCGCCGTTTG TCGGAGCGTC GTATGTTTCC TGCAATTGAT ATTCTGCGAT CCGGCACCAG AAAGGAAGAG CTGTTGTTTA CGCAGCAGGA ACTCTCAAGA ACCTGGCTGC TGCGTAAATA TCTGGCAGAT AAAAATCCAA TCGAGTGTAT GGAGTTCATG CGTGAAAAAA TATCCGACAC CAAAGATAAC AAAGAGTTTT TCAAACATAT GAATGCTTAG
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Protein sequence | MSNNSVSKGL DINMLQKKKV HELNTLAKEF GVVNAGLRKE ELIYKIIEAQ SQKGSSTESG QVMVNTGVLQ VIPEGYGFLR SSNYNYLSSP DDIYVSPSQI KRFNMRTGDT VSGQVRAPKE GERFFALLKI NTIDGKDPEI TRERPFFENL TPLFPRERLI LETSQNEHCG RIMDIFTPIG KGQRGVIVAQ PKTGKTMFLQ TVANAIIKNH PEVYLIVLLI DERPEEVTDM QRSVPAEVVS STFDEDPERH VQVADMVLEK AKRLVEVGND VVILLDSLTR LARAHNTIIP HSGKILSGGI DANALTKPKR FFGAARNIEE GGSLTIIATA LVDTGSRMDD VIFEEFKGTG NMELVLDRRL SERRMFPAID ILRSGTRKEE LLFTQQELSR TWLLRKYLAD KNPIECMEFM REKISDTKDN KEFFKHMNA
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