Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_0319 |
Symbol | rpoB |
ID | 6373979 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | + |
Start bp | 315255 |
End bp | 319163 |
Gene Length | 3909 bp |
Protein Length | 1302 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 642682838 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001958769 |
Protein GI | 189499299 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.672728 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00209442 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGAAAGTGG CTGATAAAAC ACAGAAAAAG TGTATTGCCT TTTCCAAGAT CCAGAGTATT GTAAATCCTC CTGATTTATT ACAAGTTCAG TTAGATTCGT TCAAGAGGTT CATTCAGGAC AGTGTTCCTC TTGCCAAACG TAAAGACCAG GGGCTTGAAA AGGTACTGAG AAGTGCTTTT CCGATTACTG ATACCCGGGG TCTTTATCTA TTAGAATATA TATCATATAC ATTTGACAAA CCGAAATATA CTGTCGAGGA GTGTATTGAG AGGGGCCTGA CCTACGATGT TTCACTGAAG GTCAAGTTGA AACTCTCCTA CAAGGATGAG CCCGATGAGC AGGACTGGAA AGAGACTATC CAGCAGGAGG TATATCTCGG ACGTATTCCC TATATGACCG ACCGCGGTAC ATTTATTGTG AATGGAGCGG AGCGGGTTGT CGTTGCACAG CTTCATCGTT CGCCCGGTGT TGTTTTCAGT GAGGCTATAC ATCCGAACGG CAAAAAGATG TATTCCGCAA AGATTGTGCC GACACGAGGG TCCTGGATTG AGTTCCAGAC CGATATAAAT AATCAGATCT ATGTCTATAT CGACCAGAAA AAGAACTTTC TTGTCAGTGC ATTGCTTCGC GCCATCGGGT TTACAAAAGA TGAGGATATC CTCAGTCTGT TCGATCTGAT CGAAGAGGTT CCGGTAAAAG CCAACAAGAA AGAGTACCTT ATCGGCAAGA ACCTTGCGTC TGATATCATC GATATGCAGA CAGGTGAGGT TGTCAGTGCC AGAACGGCGA TTACAGAGGA GATACTGGAT CAGATTACCG CAGCGGGCTC CAAGACGGTC AGGATCATGA AACCCGGTAC GGGCGAGAAG GGACTCGATA AATCTGTTGT CACCAATACC ATTCTCAATG ATTCTTCCGC AACAGAGGAA GAGGCTCTGG AGATTGTCTA CGAGGAGCTT CGCGCAAACG AGGCGCCGGA TATTGACGCC GCGAGAAGTT TTCTTGAAAG AACGTTTTTC AATCAGAAAA AATATGATCT GGGAGACGTA GGCCGATACA GAATCAATAA GAAACTCGGG AAGGAACATG AAGCTTTCAA AGAGTTTCTC AGTGGACAAC CCGAACTGAA GGCGCTGTCC GACAGTATTT ACGAGAAAAT TCTCCAGACG ATACAGTCAT ATTCAGACGA GCCGATAAGC GATGATATCA TGGTGTTGAC ACACTATGAT ATCATTGCGG TTATCAACTA TCTCATCAAA CTGGTGAACG GACAGGCAGA AGTTGACGAT GTTGACCATC TCGCGAACAG AAGAGTGCGA ACGGTTGGTG AACAGCTCGC GGCACAGTTT GTTATAGGGC TTGCAAGAAT GGGCAAAAAC GTCCGTGAAA AACTTAATTC ACGTGATACG GACAAGATAG CTCCTGCTGA TCTTATTAAC GCAAGAACGG TATCGAGTGT TGTTTCGAGC TTTTTCGCTA CAAGTCAGCT TTCGCAGTTC ATGGATCAGA CAAACCCGCT TGCCGAAATG ACCAACAAGC GGAGGGTTTC CGCTCTTGGC CCGGGTGGTC TTACCAGGGA ACGCGCAGGT TTTGAGGTTC GTGACGTTCA CTATACGCAT TATGGCCGTC TCTGCCCTAT CGAGACGCCG GAAGGCCCCA ATATAGGGTT GATTTCTTCG TTGTCGGTCT ATGCGGAGAT CAATGATAAA GGGTTTATCC AGGCCCCGTA CCGTGTCGTC GAGAAAGGTA TAGTGACCGA CAAGGTCGAG ATGCTTTCGG CCGAGGACGA AGAGAACAAG ATCACTGTTC CGGTCAGCGT GAAATTTGAC GAGAACAGGA GAATAACCAC GGAAACGGTT CAGGCGAGAA CAAAGGGTGA TTACCCTGTC GTTGACGCCG AACAGGTGGA TTATATGGAT GTCTCGCCGA TTCAGATTGT CAGCGCGGCA GCGGCTCTGA TTCCTTTTCT TGAGCATGAT GACGGTAACC GCGCTCTTAT GGGAGCAAAC ATGCAGAGGC AGGCTGTTCC GCTTCTTGTT GCTGACGCGC CGCTGGTAGG TACCGGTATG GAAGCCAAAG TTGCACGTGA CTCCCGGGCG GTGGTTCTTG CCGAAGGAGA TGGTGTTATA GAGTCGGTTA CCGCGGAAAG TATCCGTGTC CGCTATGACA TGCATGAAGA TGAAGATGAT CGGATGATCA TGCTGGATCC GGATGAAGGG GTCAAGACCT ACAATCTGAT CAAGTTTAAA CGTTCTAACC AGGACACCTG CATCTCTCAG AAACCGGTCG TACGGACAGG TCAGAAACTT GAGAAAGGAG ATGTGCTCGC TGACGGTCCG TCCACTGAAA ATGGTGAGCT GGCGCTCGGC AAGAACGTGC TTGTCGCATT CATGCCCTGG AGAGGCTATA ACTTTGAAGA CGCTATTGTT CTCAGTGAGC GTCTGGTTTA TGATGATGTG TTCACATCGA TCCACATTCA TGAGTTCGAA GCCAATGTCC GCGACACGAA GCGTGGTGAG GAACAGTTCA CCCGTGACAT TTACAATGTC AGTGAAGATG CGTTGAGAAA CCTTGACGAG AACGGTATTA TTCGTATCGG TGCGGAGGTC AAGGAACGTG ATATCCTTGT CGGCAAGATT ACGCCGAAAG GGGAAAGTGA TCCTACTCCG GAAGAAAAAC TGCTTCGAGC CATTTTTGGT GACAAGTCCA GTGATGTGAA AGATGCATCG ATGCATGTTC CTGCAGGAAT GAAGGGAATT GTGATCAAGA CAAAGCTGTT CAGTCGCAAA AAGAAGGTCG GCCTGGATAT CAGGGAGCGG CAGGAGGCGA TTGACGCCTT GTTCGAACGC AGGACAGCGG ATCTCCGGAG CCGCTTCAAC ACGTGGATGA ACCAGCTTTT TGAGGGTAAA AAGAGTACGG GAATCTACAA TCTGAAGGGA AAAGAGATTG TTCCTGCCGG AAGTGTACTT GATGCAGAAA CGCTTGGCAA GTTTGCCGGT CCCGGTTTTC TTGAATCTGT GGACCTCTCC AAAGGTATCG TCAAGGACGC GAAAGCCAAC GCGACGCTGC TTCGCCTCTG CAGAGAGTAT CGTCTCATGC TGAAGGATAT GGAAGATGAG CGTGAGAATG AAAAATACAA GCTCAATATA GGAGATGAAC TTCCACCCGG AATTGAAGAG CTTGCAAAGG TCTACATCGC GCAGAAAAGA AAAATACAGG TTGGCGACAA GATGGCCGGT CGTCATGGTA ACAAGGGTGT GGTCGGAAAA ATACTGCCAA TTGAGGATTT GCCTTTCATG GGAGACGGCA CGCCGGTTGA TATCGTCCTG AACCCTCTCG GTGTTCCGAG CAGGATGAAT ATCGGTCAGC TTTATGAAAC CTCGCTCGGA TGGGCTGCAA GGGCACTCGG TGTTCAGTTT AAAACGCCGA TTTTTGATGG CGCAACCTAC ACCGAGGTAC AGGAACAGCT TGAAAAAGCC GGTCTGCCCA TGCACGGGAA AGTCAGGCTT TACGACGGCC GCACAGGAGA GCCTTTTGAT GATGAGGTCA CGGTCGGATA CATCTATATG CTGAAACTGA GTCATCTTGT CGATGACAAG ATTCACGCAC GTTCGACCGG TCCGTACTCG TTGATAACAC AGCAGCCGCT GGGCGGAAAA GCGCAGTTCG GTGGTCAGCG GTTTGGTGAG ATGGAGGTAT GGGCACTTGA GGCATACGGC GCGGCAAATA TTCTCAGAGA GATGCTTACC GTTAAATCAG ATGATGTCGT GGGGAGAAAC AAGACCTACG AATCGATTGT CAAAGGCCAG AATCTTCCCG ATCCCGGAAC GCCGGAATCG TTTAATGTGC TGGTCAGGGA GCTGCAGGGC CTTGGACTTG AAATACGTAT TGACAACAAG GTTCCGTAG
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Protein sequence | MKVADKTQKK CIAFSKIQSI VNPPDLLQVQ LDSFKRFIQD SVPLAKRKDQ GLEKVLRSAF PITDTRGLYL LEYISYTFDK PKYTVEECIE RGLTYDVSLK VKLKLSYKDE PDEQDWKETI QQEVYLGRIP YMTDRGTFIV NGAERVVVAQ LHRSPGVVFS EAIHPNGKKM YSAKIVPTRG SWIEFQTDIN NQIYVYIDQK KNFLVSALLR AIGFTKDEDI LSLFDLIEEV PVKANKKEYL IGKNLASDII DMQTGEVVSA RTAITEEILD QITAAGSKTV RIMKPGTGEK GLDKSVVTNT ILNDSSATEE EALEIVYEEL RANEAPDIDA ARSFLERTFF NQKKYDLGDV GRYRINKKLG KEHEAFKEFL SGQPELKALS DSIYEKILQT IQSYSDEPIS DDIMVLTHYD IIAVINYLIK LVNGQAEVDD VDHLANRRVR TVGEQLAAQF VIGLARMGKN VREKLNSRDT DKIAPADLIN ARTVSSVVSS FFATSQLSQF MDQTNPLAEM TNKRRVSALG PGGLTRERAG FEVRDVHYTH YGRLCPIETP EGPNIGLISS LSVYAEINDK GFIQAPYRVV EKGIVTDKVE MLSAEDEENK ITVPVSVKFD ENRRITTETV QARTKGDYPV VDAEQVDYMD VSPIQIVSAA AALIPFLEHD DGNRALMGAN MQRQAVPLLV ADAPLVGTGM EAKVARDSRA VVLAEGDGVI ESVTAESIRV RYDMHEDEDD RMIMLDPDEG VKTYNLIKFK RSNQDTCISQ KPVVRTGQKL EKGDVLADGP STENGELALG KNVLVAFMPW RGYNFEDAIV LSERLVYDDV FTSIHIHEFE ANVRDTKRGE EQFTRDIYNV SEDALRNLDE NGIIRIGAEV KERDILVGKI TPKGESDPTP EEKLLRAIFG DKSSDVKDAS MHVPAGMKGI VIKTKLFSRK KKVGLDIRER QEAIDALFER RTADLRSRFN TWMNQLFEGK KSTGIYNLKG KEIVPAGSVL DAETLGKFAG PGFLESVDLS KGIVKDAKAN ATLLRLCREY RLMLKDMEDE RENEKYKLNI GDELPPGIEE LAKVYIAQKR KIQVGDKMAG RHGNKGVVGK ILPIEDLPFM GDGTPVDIVL NPLGVPSRMN IGQLYETSLG WAARALGVQF KTPIFDGATY TEVQEQLEKA GLPMHGKVRL YDGRTGEPFD DEVTVGYIYM LKLSHLVDDK IHARSTGPYS LITQQPLGGK AQFGGQRFGE MEVWALEAYG AANILREMLT VKSDDVVGRN KTYESIVKGQ NLPDPGTPES FNVLVRELQG LGLEIRIDNK VP
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