Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_0311 |
Symbol | |
ID | 6373967 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | + |
Start bp | 308651 |
End bp | 310711 |
Gene Length | 2061 bp |
Protein Length | 686 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642682826 |
Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
Protein accession | YP_001958761 |
Protein GI | 189499291 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000765194 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000149444 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCAGAATT TTCCGATTTC CATGTATCAG TATAGCAGGA GGCTGACCCG TGAGGTTGGT TTCGGTTCGC TATCTCTCGG CGGCTATCAG CCCGTCAGGG TAGAGTCGAT GACGACAACG CATACTATGG ATACAAGCGC TTCCGTGGAG CAGTGCCGGA GGCTCCATGA AGCAGGTTGT GAGATTATCC GCCTGACGGT TCCTACAGAG AAGGACGCTG AAAATCTCAA GACCATTCGT GACCAGCTTC GGCGGGATGG AGTTGCTACA CCGCTTGTAG CCGATATTCA TTTTTCTCAG AAAGCCGCCC TCAAAGCGGT GGAGTTCGTC GAAAATGTCC GGATCAATCC GGGTAATTTT GCCAATACCC AAAAATTCAC CAACGAGGAG TATACTGCGC AGTCCTATGA TTCGGAACTT GAAAAAGTAC GGGAAGCGTT TCTTCCTCTG ATCGGGAAAG CAAAGGCATT CGGGGTGTCG ATGAGGATTG GAACCAATCA CGGTTCGCTT TCGGACAGAA TTGTCAGCCG CTACGGAAAC ACGCCTGAGG GGATGGTGGA AGCAGCGCTT GAATTTGCCA GAATTTGTGA AGATGAAGGG TACTACGATT TTTTGTTTTC CATGAAGTCT TCCAATGTAA GGGTGATGAT TCAGGCTTAC AGGCACCTTG TCGCCAGAGC GGATACCGAA CTGCGCCATG CTTATCCTTT ACATCTCGGA GTAACCGAGG CCGGGGATGG AGATGAGGGA AGAATTAAAT CCGCGATGGG TACCGGGGCG TTGCTGGAAG AAGGCCTTGG CGACACCATC AGGGTTTCCC TCACGGAAGA TCCCGTCAAC GAAGTTCCGG TCGGGTTTGC GTTGGTGAAA AAGTATAATG ATTTACTGAA GGTAAAGGGC GAAAAAGGCC ATGCGCCGGT TAACAGGATC ATCATGTCAC GTGCGGCGAG AGCTTGCTTT GAGCTTCCTC CTTTTGATCC GTTCAGCTAC AGGAAGCGGA AGTCAGGGGT GCTGTCAACA GCTGATGGTG ACATAGGAGG AGAGAGTCTT CCTATGGTTG AGACTGTCAC CAAAGCTTCG GTCGCGGCCA ACCCGGAGCA GCTTCTCGCG GAGTTGCGCA GAAGGTTGGT GGTTGACAGT GCCGACAAGG AGATCAGATC GGAACTGGTA ACCGTTCCGG CAGGTTCAGC GGTCGAATCG GAAGCTCTTG AGCCGGTTCT TGCCGAACTC GGTGTCTGCC GGAGCCGTGT AGGTGTCGCT ACAGGTGATG TTTCGCTTGT TCCGGATCTT CTGAAGCGTG CGGCGAGAGT TCGTTTAGAT ATCCGTGAAG GTGAGATGAT CGATAAAACC TTTTTTGACT CGCTTGATGG TGGGGGCGCA CTCCTGGAGT TTTGCTTTAT TCATGAGCAT GCGTCGGAAC AGGTTCCGGC TGAAGTTCTT TCGCGAATAG CGCTGAAGAT GCAGTCGAAG GGTATTGAAA AGCTCCTTTT TTCAATACAA TCACCTGTTC CGGTCTATGC CTATCGTTAT CTTGTTCGCG GTTTTAACGA GCAGGGCCTC GACTATCCTC TGGTAATACG GTATCATGCC TTGAATAAAG GGCGTCTTGA GACACTTATC GATTGCGCCA CACAGACCGG TACACTTTTC TGTGACGGCA TAGGTGATAT GCTTGCCCTG GAGACAGACC TTGCTGAAAG TGAAGAGATC AGCCTTGCTT TTAATGTTCT GCAGGCTGCC AGAGTGAGAA TGTCGAAAAC GGAGTTCATC TCCTGTCCGG GGTGTGGCAG AACCTATTTC GATCTTGAAA AAACTACAGC GGTGATCAAA GCCCGGATGT CTCATCTGAA AGGGCTGAAA ATCGGTATTA TGGGTTGTAT CGTCAATGGT CCCGGAGAGA TGGCTGACGC TGATTTCGGG TATGTCGGTT CGGGAAAATC CGGGGTAAGT CTCTATGTTG GCAAAGAATG TGTCGCGTCT AACATTCCTG AAAAAGATGC CGTCGACAGG CTTGTTGATC TCATCAGGTC ACATGGCCGA TGGGTTGAAC GGGTTGCATA G
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Protein sequence | MQNFPISMYQ YSRRLTREVG FGSLSLGGYQ PVRVESMTTT HTMDTSASVE QCRRLHEAGC EIIRLTVPTE KDAENLKTIR DQLRRDGVAT PLVADIHFSQ KAALKAVEFV ENVRINPGNF ANTQKFTNEE YTAQSYDSEL EKVREAFLPL IGKAKAFGVS MRIGTNHGSL SDRIVSRYGN TPEGMVEAAL EFARICEDEG YYDFLFSMKS SNVRVMIQAY RHLVARADTE LRHAYPLHLG VTEAGDGDEG RIKSAMGTGA LLEEGLGDTI RVSLTEDPVN EVPVGFALVK KYNDLLKVKG EKGHAPVNRI IMSRAARACF ELPPFDPFSY RKRKSGVLST ADGDIGGESL PMVETVTKAS VAANPEQLLA ELRRRLVVDS ADKEIRSELV TVPAGSAVES EALEPVLAEL GVCRSRVGVA TGDVSLVPDL LKRAARVRLD IREGEMIDKT FFDSLDGGGA LLEFCFIHEH ASEQVPAEVL SRIALKMQSK GIEKLLFSIQ SPVPVYAYRY LVRGFNEQGL DYPLVIRYHA LNKGRLETLI DCATQTGTLF CDGIGDMLAL ETDLAESEEI SLAFNVLQAA RVRMSKTEFI SCPGCGRTYF DLEKTTAVIK ARMSHLKGLK IGIMGCIVNG PGEMADADFG YVGSGKSGVS LYVGKECVAS NIPEKDAVDR LVDLIRSHGR WVERVA
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