Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_0020 |
Symbol | dapD |
ID | 6373662 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | + |
Start bp | 24316 |
End bp | 25173 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642682541 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_001958490 |
Protein GI | 189499020 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000761823 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCTTG AAGAAGTAAG AACACGTATA GAAGAACTGG CAGCTCTGTC TGCTCCGGAA TTACAGAAAC ACGATGACGC GCGAGAGGTT TTCAGCGCAT TCAAGGTTCT GTTGAACAGC GGCCAGGCAA GAGCGGCGGA GAAAAAAGAC AGCTCCTGGC AGGTAAACGC CTGGGTAAAA CAGGGGATTC TCCTGGGGAT GAAGCTTGGC ATACTCTGCG AGAGTTCGAT TGCTTTTCCC GAAGGCAATG ACTGGACATT TGTTGACAAG GATACCTATC CGGTCAGGCG CTTTGTAAAG GAAGATGGTA TCCGAATTGT GCCCGGAGGT TCTTCAGTGA GGGATGGCGC CTATCTGGCT TCTTCAGTGG TTATGATGCC CCCGGCATAC GTCAATGTCG GGGCATATGT CGATGCGGGC AGCATGATTG ATTCACACGC TCTTGTAGGC AGCTGCGCAC AGGTGGGCCG AAACGTTCAT CTTTCTGCTG CGGTTCAGGT CGGCGGTGTT CTTGAACCGA TAGGCGCTGT TCCGGTAATC ATTGAAGATG ATGTCATGGT CGGGGGGAAC TGCGGCATTT ATGAAGGCAC GATCGTCCGT TCGCGATCGG TGATCGGCAC AGGCGTCATT CTCAACGGCT CTACACCTGT CTATGATCTG GTAAACAAAA GCATTATCAG AAAAACCCCT GAAACCCCTC TTACGATTCC TGAAGGAGCA GTTGTCGTTG CCGGTTCCCG AAAGATACAG GGGGAGTTCG CCGCTGAGCA CGGTCTTTCA ATCTACACTC CCTTGATCGT CAAGTACAGG GATGAAAAAA CGGATAGTGT GACGGCGCTG GAAAGCGCGT TGCGATGA
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Protein sequence | MQLEEVRTRI EELAALSAPE LQKHDDAREV FSAFKVLLNS GQARAAEKKD SSWQVNAWVK QGILLGMKLG ILCESSIAFP EGNDWTFVDK DTYPVRRFVK EDGIRIVPGG SSVRDGAYLA SSVVMMPPAY VNVGAYVDAG SMIDSHALVG SCAQVGRNVH LSAAVQVGGV LEPIGAVPVI IEDDVMVGGN CGIYEGTIVR SRSVIGTGVI LNGSTPVYDL VNKSIIRKTP ETPLTIPEGA VVVAGSRKIQ GEFAAEHGLS IYTPLIVKYR DEKTDSVTAL ESALR
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