Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpha266_0225 |
Symbol | |
ID | 4570712 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides DSM 266 |
Kingdom | Bacteria |
Replicon accession | NC_008639 |
Strand | + |
Start bp | 249984 |
End bp | 252017 |
Gene Length | 2034 bp |
Protein Length | 677 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 639764825 |
Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
Protein accession | YP_910716 |
Protein GI | 119356072 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTCAAT ATCGTCGGCG TTTTACACGT GAAGTACCTT TTGGAAAGAT TGCTCTGGGC GGATATATGC CTATAAGAGT TGAGTCGATG ACCAATACCC ACACACTTGA TACGGTGGCA ACGGTTAAAC AGTGCCGTCG TCTTTATGAG GCGGGTTGTG AAATCATACG ATTAACCGTC CCGACTGAAC GAGATGCTGA AAATCTGAGG TCTATAAGGG ATCAGCTCCG AAGTGACGGT ATTGATACGC CTCTTGTTGC CGATATTCAT TTTTCCTCTC GTGCCGCATT CAAGGCTGTC GAGTTTGTTG AAAACATCAG AATCAATCCT GGCAATTATG CCACAAAGCA GAAGTTTTCG GCAGAAACTT ATACTGACGA CGAATACCAG GAAGAGATTG AACGGGTTCG CAAGGAGTTT CTTCCCCTGG TTTACAAGGC TCGTGAATTT GGGGCATCCA TGAGGATCGG TACCAACCAT GGATCTTTGT CCGATCGTAT AGTGAGCCGA TATGGCAATT CTCCTGAGGG TATGGTTGAG GCTGCCCTGG AGTTTGCGAG AATCTGTGAA GAGGAAGGAT ATCATGATGT CTTGTTTTCG ATGAAATCTT CCAATGTCAA GGTGATGATA CAAGCGTATC GTCTGCTTGC CGTCAAGGCT GACGCTGAGT TGCGTTATGC TTATCCCCTT CATCTTGGCG TGACTGAAGC AGGCGACGGC GATGAGGGTC GTGTCAAATC GGCTATGGGA ATTGGTGCCC TTCTGGAGGA CGGCCTTGGC GATACCATAC GAGTTTCGTT GACGGAAGAT CCTGTAAATG AGGTCCCGGT AGGTTTTGCC ATTGTGAAAA AATACAATGA TCTGCAATTG ATAAGAGGCG AAAACGGGCA TGTTCCGATA AAGCAGCTCA TTGAAAATCA AGGCTCTTCT TTCACGAATG AGTTGCCGCC TTTTGACCCT TTCAGTTATC AACGCAGGAT TTCCCGTTCT TTTTTTGTCG GAGGGTTTGC CATAGGAGGT GATTCGATGC CGAGGGTTGA AACCGAGGCC GTAATTCCCT TATGTCGGCC TGAAGAGCTG TTTCATGAGA TCATGCAGCG ACTTCTTCCC GAAGAGTCAA TTGACGCCAT TCGGTCAGAA TTGGTTGGTG TTCGTGTCAA CACCGTTGAA GATCTTGAAC TTCTTGATGA GCTCTTAAGC CGACTCGGCG AAGCAAAACG TTTTATTACG GTTTCAACAA AGGATATCGA ACTGTTTTTT CGGCTTCTTG ACAAGGTGGA AAAGGTAAGA CTTGATATTA CGGAAGGCGA GATGCTTGAC AGGAATATTT TCGATCGTCT GACTAATGAT CGACTCGCAT CGGTAGAGTT TTGCTTTCTT CATGAAACAA GCGGGGCCGG TGTGCCGGCT GAGGTTCTTG GACTGCTTGC GCAAAAGGCC GGATTGCAGG GTCTCGAAAG GATCTTTTTT TCCATTCTCT CCGCTCATTC GGTTTTCGTC TATCGCAGGC TTGTTCAGTT TTTCAGTAAA AGGGGTTTTG ATTATCCCCT TGTTATCCGT TTCAGGCAGA TGGATTCTGT TAAGCTTGAT TGTCTTATCA GTTGCGCAGT GCAAACCGGA TCGCTTTTTT CGGATGGCAT CGGAGATGTT CTTGCTCTTC AAACAGGCCT CGATGTTGCC GCTGAAATCA CTCTTGCATT CAATATACTT CAGGGCGCGC GTATCAGAAT GTCTAAAACC GAATTCATAT CCTGTCCGGG ATGCGGCAGA ACCTATTTTG ATCTTGAAAA AGCAGCAGCA TCGATCAAGC TGCGACTATC GCACCTCAAG GGATTGAAAG TTGGTATTAT GGGCTGCGTT GTCAACGGAC CGGGAGAAAT GGCTGATGCC GATTTTGGTT ATGTTGGTTC CGGGAAAGGA CGGATCAGTC TATATGTTGG CAAGGAGTGC GTTGAAGAGA ATCTCCCTGA AAGTGCCGCG GTTGACCGTT TGGTCGGGCT TATCCAGGAA AAAGGCAAAT GGGTGAATCC CTGA
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Protein sequence | MFQYRRRFTR EVPFGKIALG GYMPIRVESM TNTHTLDTVA TVKQCRRLYE AGCEIIRLTV PTERDAENLR SIRDQLRSDG IDTPLVADIH FSSRAAFKAV EFVENIRINP GNYATKQKFS AETYTDDEYQ EEIERVRKEF LPLVYKAREF GASMRIGTNH GSLSDRIVSR YGNSPEGMVE AALEFARICE EEGYHDVLFS MKSSNVKVMI QAYRLLAVKA DAELRYAYPL HLGVTEAGDG DEGRVKSAMG IGALLEDGLG DTIRVSLTED PVNEVPVGFA IVKKYNDLQL IRGENGHVPI KQLIENQGSS FTNELPPFDP FSYQRRISRS FFVGGFAIGG DSMPRVETEA VIPLCRPEEL FHEIMQRLLP EESIDAIRSE LVGVRVNTVE DLELLDELLS RLGEAKRFIT VSTKDIELFF RLLDKVEKVR LDITEGEMLD RNIFDRLTND RLASVEFCFL HETSGAGVPA EVLGLLAQKA GLQGLERIFF SILSAHSVFV YRRLVQFFSK RGFDYPLVIR FRQMDSVKLD CLISCAVQTG SLFSDGIGDV LALQTGLDVA AEITLAFNIL QGARIRMSKT EFISCPGCGR TYFDLEKAAA SIKLRLSHLK GLKVGIMGCV VNGPGEMADA DFGYVGSGKG RISLYVGKEC VEENLPESAA VDRLVGLIQE KGKWVNP
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