| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpha266_0109 |
|---|
| Symbol | |
|---|
| ID | 4569463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides DSM 266 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008639 |
|---|
| Strand | - |
|---|
| Start bp | 126637 |
|---|
| End bp | 129036 |
|---|
| Gene Length | 2400 bp |
|---|
| Protein Length | 799 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639764711 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_910603 |
|---|
| Protein GI | 119355959 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTAA AATCCCCGGC AGCCTCGGCA AGAAACAGGA CTCTTATTGT TGTCGAGTCT
CCATCAAAGG CAAAAACAAT CAACAAATAC CTTGGGGACA AATATACCGT TTTCGCTTCG
GTCGGGCACA TCAAGGATCT TCCGAAAAAA GAGATCGGAC TTGATTTCGA TCACCACTAT
GAACCACGAT ACGAAGTCAT TGCAGGAAAA GAAAAAGTTG TCCGGCAGCT CAAAAAGCTT
GCCGATGAAT CCAACGAGAT CCTGATCGCA ACTGACCCTG ACCGCGAAGG CGAAGCGATT
GCCTGGCATA TTGCCAACGA AGTGGAATTT GCCCATAAAC CGGTATTCCG GGTGCTGTTC
AATGAAATCA CCAAAACAGC CATTATCGCC GCTATCCAGC AACCTCGCCA AATCGACTAC
CGCCTTGTCC GCTCCCAGCA GACGCGACAG GGTCTCGATA AAATCGTAGG ATACAAGATC
AGCCCCTTTC TATGGAATGT TGTCTTGCGC GGACTCTCCG CAGGAAGAGT TCAGTCTGTC
GCATTACGGT TGATCTGTGA ACGCGAAGCC GAAATCAATG GATTTCAGAT CCAGGAGTAC
TGGAGCATTG CCGCTGACTT TAAAACCGAT CTCAACGAAA CCTTCCGGAC AAAGCTCATT
AAAATAAAGG GCGACAAACC CGAGCTTTCC AATCAGAAAA AAGCCGAAAC CGCTGCGGCA
GAAATCAGTG AACGCCTGTT TGCCGTAAAG GAGATAACGA CAAGGGTGCA ACAGCGAAAG
CCCCCGTTTC CCTTTACCAC CTCGCTTCTT CAGCAGGCGG CCTCAAACCA GCTCGGGTTC
GGATCGCAGA AGACCATGCG GATTGCCCAG CAGCTCTATG AAGGGATCGA GCTTGGCGAC
GAAGGCGCAA CCGGTCTGAT CACCTATATG AGAACCGACT CAATCAGAAT AGGAACAGAA
GCGACCGCCG AGGCAAGAAA CTATATCACC GCTCAATTCG GCAAGGAGTA CGTCGGATAC
GGAGGCGCTG CAAAAGCGGG CAAAAACGCG CAGGACGCCC ATGAGGCAAT CCGTCCCACC
TCGCTGTTAC GAAAACCGGA ATCGGTCAAA CACTTCCTTT CAAGCGATCA GTTCCGACTG
TACGAACTGA TCTGGAGGCG GCTCCTTACC GCCATGATGG CTCCCGCAAA AATAGAACAG
ACAAGAGTCG ATGTCGAAGA TCGTGAAAAA GAGTTCACCT TCAGAGCCAA TGGCAGCAGG
GTGCTTTTTG CCGGATTCAT GCGGGTTTAT GACGATCAGC AGGAACTGGA TTATGAAGCT
CAGTCCTCAA CGCGCGACGA TGTTGAAAAA GAACAGACTG TTCAGCTCCC CGAGAAACTG
AAGGAACAGG ACAAGCTTGG TCTCGCAGGC CTTGACAGCA AGCAGAGCTT CACCCGACCT
CCCGCCCGAT ACAGCGAAGC AACGCTCGTC AAGGATCTGG ACAACTACGG GATCGGACGC
CCGTCAACCT ATGCATCGAT TTTTTCAACC CTGCAGGATC GACGCTATGT TGAGCTGCAA
AAGAAAAAAA TCATACCGAC AGAGCTTGGC AAGGATGTCT CGCTTATTCT TGTGGCAAAT
TTTCCCGAAC TGTTCAATGT CGGCTTCACG GCACATATGG AGGACGAGCT TGACAAAGTT
GCTTCCGGAG ACGATGAGTA CGAAGCTGTG CTCGAAAAAT TCTATCGACC GCTTGAAACG
GCATTGAGTC TGAGAAAAAG CGACCCGATC ATTCCCCAGA ACAGTGCGAC CGAGACCTGC
GACAAATGCG GAAAGGGACA AATGACCGTA AAATGGACGG CAAGCGGAAA ATTTCTCGGC
TGTTCGCGCT ACCCTTCATG CAAAAACATC AAGCCGCTGA GCTCATCGAA AGCAAAACCG
AAAGATACCG GAATACAGTG TCCCTCCTGT AAAGAGGGAC ATATGCTGCT CCGAGACGGA
AGACTCGGCC CTTTTCTTGC CTGCTCCAGC TATCCGAAAT GCAATACGCT GCTCAATCTC
GGCAAACAGC GCCAGGTCGA ACCGATGAAA ATTCCTCCGC TCCTCACCAC CCTTGTCTGC
CCGAAATGCG GAGCTCCAAT GAACCTCAGA AGCGGAAAAA GAGGACTATG GCTCGGATGC
TCCAAGTTCC CGAAATGCCG CGGACGACTT GCCTGGGGAA CCCTGGATGA GGAGGTTCAG
CGCCACTGGG AAACCCTGAT GACAGAGCAT CAAAAAGCCC ATCCGACAGT TGCGCTGACC
ATGATAGACG GGCGTCCGGT ACCGCTCACC CTTTCGGTTG ACGATATCAT CACCCGAGCC
GAAGAGGCCG GACTTATTGC CGCCGTACCG GAAGAGCAGC AGGAGCTCAC AGCAGAATAA
|
|---|
| Protein sequence | MALKSPAASA RNRTLIVVES PSKAKTINKY LGDKYTVFAS VGHIKDLPKK EIGLDFDHHY
EPRYEVIAGK EKVVRQLKKL ADESNEILIA TDPDREGEAI AWHIANEVEF AHKPVFRVLF
NEITKTAIIA AIQQPRQIDY RLVRSQQTRQ GLDKIVGYKI SPFLWNVVLR GLSAGRVQSV
ALRLICEREA EINGFQIQEY WSIAADFKTD LNETFRTKLI KIKGDKPELS NQKKAETAAA
EISERLFAVK EITTRVQQRK PPFPFTTSLL QQAASNQLGF GSQKTMRIAQ QLYEGIELGD
EGATGLITYM RTDSIRIGTE ATAEARNYIT AQFGKEYVGY GGAAKAGKNA QDAHEAIRPT
SLLRKPESVK HFLSSDQFRL YELIWRRLLT AMMAPAKIEQ TRVDVEDREK EFTFRANGSR
VLFAGFMRVY DDQQELDYEA QSSTRDDVEK EQTVQLPEKL KEQDKLGLAG LDSKQSFTRP
PARYSEATLV KDLDNYGIGR PSTYASIFST LQDRRYVELQ KKKIIPTELG KDVSLILVAN
FPELFNVGFT AHMEDELDKV ASGDDEYEAV LEKFYRPLET ALSLRKSDPI IPQNSATETC
DKCGKGQMTV KWTASGKFLG CSRYPSCKNI KPLSSSKAKP KDTGIQCPSC KEGHMLLRDG
RLGPFLACSS YPKCNTLLNL GKQRQVEPMK IPPLLTTLVC PKCGAPMNLR SGKRGLWLGC
SKFPKCRGRL AWGTLDEEVQ RHWETLMTEH QKAHPTVALT MIDGRPVPLT LSVDDIITRA
EEAGLIAAVP EEQQELTAE
|
|---|
| |