Gene Coch_2112 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_2112 
Symbol 
ID8368573 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp2531804 
End bp2532925 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content39% 
IMG OID644984566 
Productcell wall hydrolase/autolysin 
Protein accessionYP_003142217 
Protein GI256820938 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0823125 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTTA TATACATTCT TCTTTTTTCA CTATGCAGTA GTACTTTTAG TCTGTTTTAT 
GGACAGAAGA ACCCTGTGTT TAAAGTAGTT TTAGATGCGG GTCACGGAGG TAAAGACCCC
GGTAAAGTAG TACAGAAAAA CATCTTTGAG AAAGATGTGG TGCTGAAAAT AGTATTATTA
GTAGGCAAAA AGTTAGAGGC TTACCCTGAT ATAAAGGTGA TTTACACTCG CAAAACCGAT
GTGCTAATTG ACCTTTATGA GCGTGGAGCT ATTGCCAACA GGAACAAAGC CGATGTATTC
GTTTCAGTAC ACTGCAACGC TCACGAAACA CAAGTAGACG GTGCGGAAAC ATATGTATTA
GGGCTACACG CCAACCAGCA GAACTTTGAG GTTGCCAAAG CCGAAAACTC GGTAATCTAC
TTGGAAGATG ATTACAAAAA GAAATACGCT AAGTACAATA TCAACTCACC TGAATCGGTA
ATAGGGCTAT CTATTATGCA AGAAGAGTTC TTGGAGCAGA GCATTCAGCT AGCTAAGTTA
GTGCAAAACC AACTCACAGG AGTGATGAAA CGCACTAACA GAGGCGTGCG CCAAGCGGGA
TTCATCGTCT TGCACCAAAC CTATATGCCC AGTATTCTTA TAGAAACAGC ATTCCTTACT
AACAACGAGG AACGCAAATT CCTCACCTCG GCTAAGGGGC AAGAAGAGTT TGCAGAGAAC
ATTGCTGAGG CGATACTCGC TTACAAGAAA TGGATAGAAG ACAAAAGTTC TTATACTACC
CCTGACGACA GTATTTCACA AGTAAGAGAA AAAAGTAATA CCCCAAGACA AAGTACAAGT
AATAGCACTA TCAACAACAG CGATTTGAGC TATAAAGTAC AGATATCATC AAGCCCTAAA
AATTTAGAAA CAAAGGCTTT TAACTTCAAA GGACTCTCGC CTATATCGGT TGAAAAAGAT
GGGCGTGTAT ATGTGTATTA CTATGGTGAT ACTTCGAAGC ACAGAGAAGC CCTTGAGCTA
CTGAACAAAG CAAAAAAAAA AGGGTATAAA GATGCTTATA TCGTAGCTTT TTACCAAAAG
AAACGCATTA CAGTAGAAAG AGCTAAACAA ATAGAAAAGT AA
 
Protein sequence
MKFIYILLFS LCSSTFSLFY GQKNPVFKVV LDAGHGGKDP GKVVQKNIFE KDVVLKIVLL 
VGKKLEAYPD IKVIYTRKTD VLIDLYERGA IANRNKADVF VSVHCNAHET QVDGAETYVL
GLHANQQNFE VAKAENSVIY LEDDYKKKYA KYNINSPESV IGLSIMQEEF LEQSIQLAKL
VQNQLTGVMK RTNRGVRQAG FIVLHQTYMP SILIETAFLT NNEERKFLTS AKGQEEFAEN
IAEAILAYKK WIEDKSSYTT PDDSISQVRE KSNTPRQSTS NSTINNSDLS YKVQISSSPK
NLETKAFNFK GLSPISVEKD GRVYVYYYGD TSKHREALEL LNKAKKKGYK DAYIVAFYQK
KRITVERAKQ IEK