| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_2030 |
|---|
| Symbol | |
|---|
| ID | 8368491 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 2431144 |
|---|
| End bp | 2431740 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644984484 |
|---|
| Product | lipoprotein signal peptidase |
|---|
| Protein accession | YP_003142135 |
|---|
| Protein GI | 256820856 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0597] Lipoprotein signal peptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAA AACACGCATT CCTTATTATT CTGTTGGTAC TTATCATCGA CCAATGGAGC
AAAATATACA TCAAAACACA CTTTATCCTC AACGAAGCCG TAACCGTTTT CAGTTGGTTT
CAAATCTATT TTGTAGAAAA CGAAGGTGCA GCTTGGGGTA CTAAAATCCC CGGCGAATAC
GGCAAACTCA TTCTTACCCT CTTTCGCATT GTAGCGGTAA TAGGTATCGG TTATTGGCTG
GTATCGGCAG TGAGAAAGCA ACAACCTAAG ATACTTATCA TTTGCATTTC TTTGATATTG
GCAGGAGCAC TGGGCAATAT CATCGATTCG GTGTTTTACG GCATAATTTT CGACCATAGT
TATGGTAACA TTGCTACCCT ATTTGCCGAA AATCCTTACG GAACCCTCTT GCACGGCAAA
GTGGTGGATA TGTTCTACTT CCCTATTATC GATACCACGC TTCCCAGCTG GGTACCCATT
TGGGGAGGCG AACGCTTTCG TTTCTTCGAG CCCGTGTTCA ATGTGGCTGA CTCTGCAATA
TGTATAGCAG TGGGGCTGAT GATTTTATAT CACAAAAAGA TATTTCCTAA AAACTAA
|
|---|
| Protein sequence | MKLKHAFLII LLVLIIDQWS KIYIKTHFIL NEAVTVFSWF QIYFVENEGA AWGTKIPGEY
GKLILTLFRI VAVIGIGYWL VSAVRKQQPK ILIICISLIL AGALGNIIDS VFYGIIFDHS
YGNIATLFAE NPYGTLLHGK VVDMFYFPII DTTLPSWVPI WGGERFRFFE PVFNVADSAI
CIAVGLMILY HKKIFPKN
|
|---|
| |