| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_2013 |
|---|
| Symbol | trmD |
|---|
| ID | 8368474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 2403657 |
|---|
| End bp | 2404331 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644984467 |
|---|
| Product | tRNA (guanine-N(1)-)-methyltransferase |
|---|
| Protein accession | YP_003142118 |
|---|
| Protein GI | 256820839 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.177039 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATTG ATATTATATC GGTTGTTCCT GAACTAATGG AGAGTCCTTT TGGCTACTCC
ATTATAAAGC GTGCGATTGA TAAACAATTA GTAGAAGTAC ATTTCCACAA CTTGCACGAC
TATGCCAATA ATACCTACCG ACAAGTAGAT GACTATCAGT TTGGGGGGGG GGCAGGTATG
GTGCTAATGA TAGAGCCTAT CGATAAGTGT ATTTCAGCAC TCAAAGCTGA AAGAGATTAT
GATGAGGTGA TATTCCTCAC CCCTGATGGC GATACACTGC AACAAAAGAT GGTTAACCAA
CTGTCGTTGG CTAAGAATCT TATCATCTTG TGTGGACACT TTAAAGGGGT AGACCAACGC
GTACGCGACC ACTTTATCAC TAAAGAAATA TCCATAGGTG ACTATGTGCT TTCAGGTGGG
GAATTAGGAG CTGCTGTACT CTGCGATGCA ATTATTCGCC TTATCCCTGG TGTCCTCTCC
GATGAAACCT CAGCCCTTAC CGATTCGTTT CAAGACAATT TGTTGGCTCC ACCAGTCTAT
ACACGTCCTG CTAACTACAA GGGTTGGGAA GTACCCGAAA TTCTTACCAG TGGCAATACC
CCTAAAATAG AACAATGGCG GGAAAATATG GCTTATGAGC ATACCAAAGC CAAACGACCT
GACTTACTGA AATAA
|
|---|
| Protein sequence | MRIDIISVVP ELMESPFGYS IIKRAIDKQL VEVHFHNLHD YANNTYRQVD DYQFGGGAGM
VLMIEPIDKC ISALKAERDY DEVIFLTPDG DTLQQKMVNQ LSLAKNLIIL CGHFKGVDQR
VRDHFITKEI SIGDYVLSGG ELGAAVLCDA IIRLIPGVLS DETSALTDSF QDNLLAPPVY
TRPANYKGWE VPEILTSGNT PKIEQWRENM AYEHTKAKRP DLLK
|
|---|
| |