| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1953 |
|---|
| Symbol | prfA |
|---|
| ID | 8368411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 2348319 |
|---|
| End bp | 2349392 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644984404 |
|---|
| Product | peptide chain release factor 1 |
|---|
| Protein accession | YP_003142058 |
|---|
| Protein GI | 256820779 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0216] Protein chain release factor A |
|---|
| TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGACA AATTAAATAT CGTAAAACAA CGTTTCGACG AAGTTTCGGA CTTAATCATT
CAACCTGATA TTATTGCAGA CCAAAAGCGC TATATCCAGC TCAATAAGGA ATATAAAGAC
CTTAAAGAAC TGATGGATAA GCGCGATGAG TATATAAACG TAACTGGAAA CTTGCAAGAA
GCTGAAGAAA TTATTGCTGA TGGCAGCGAT GCCGAAATGG TGGAAATGGC AAAGTTACAA
TTAGAGGAAA GCAAAGAGCG TTTGCCTCAG TTAGAAGAAG AAATCAAGTA TATGCTTATC
CCCAAAGACC CTGAAGATGC TAAGAATGCC GTAATGGAAA TTCGTGCAGG AACAGGCGGA
GATGAGGCTT CAATCTTTGC AGGCGACCTA TACCGTATGT ACACCAAATA CTGCCAAAGT
AAAGGCTGGA GTACCTCAGT AATGGACTTT AATGAAGGAA CTGCTGGCGG GTATAAAGAA
ATTATTTTTG AAGTAACGGG AGACAATGTA TATGGTACCT TAAAATTTGA AGCAGGAGTA
CATCGCGTAC AACGAGTGCC TCAAACAGAG ACACAAGGGC GTGTTCACAC TTCGGCAGCA
ACTGTAATTG TATTGCCAGA AGCAGAAGAA TTTGATGTGG AACTTGATAT GGCTGATGTG
AAAATCATTC GTACTACTTC TACGGGACCA GGAGGGCAGT CGGTGAATAC AACCTATTCG
GCTATTCAGT TACAACATAT TCCTACAGGC ATTGAGGTGC GTTGCCAAGA TGAGAAATCG
CAGCACAAGA ATCTTGAAAA GGCACTTAAA GTATTGCGTT CACGTTTGTA CGAAATGGAA
CTGGCAAAGA AGATGGAAGC TGATTCTGCT CGTAGAAAAT CAATGGTTTC CAGCGGTGAC
CGCTCAGCTA AAATACGCAC TTATAACTAT CCGCAAGGGC GTGTAACCGA CCACCGCATA
GGTCTTACCC TTTATGATTT GCAAAATGTT ATCAATGGTG ATGTACAACG TCTTATTGAT
GAACTGCAAT TGGCTGAAAA TGCTGAGAAG CTAAAAGAAG GAGATGTTTT TTAA
|
|---|
| Protein sequence | MLDKLNIVKQ RFDEVSDLII QPDIIADQKR YIQLNKEYKD LKELMDKRDE YINVTGNLQE
AEEIIADGSD AEMVEMAKLQ LEESKERLPQ LEEEIKYMLI PKDPEDAKNA VMEIRAGTGG
DEASIFAGDL YRMYTKYCQS KGWSTSVMDF NEGTAGGYKE IIFEVTGDNV YGTLKFEAGV
HRVQRVPQTE TQGRVHTSAA TVIVLPEAEE FDVELDMADV KIIRTTSTGP GGQSVNTTYS
AIQLQHIPTG IEVRCQDEKS QHKNLEKALK VLRSRLYEME LAKKMEADSA RRKSMVSSGD
RSAKIRTYNY PQGRVTDHRI GLTLYDLQNV INGDVQRLID ELQLAENAEK LKEGDVF
|
|---|
| |