| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1577 |
|---|
| Symbol | |
|---|
| ID | 8368022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 1882428 |
|---|
| End bp | 1883168 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644984016 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003141683 |
|---|
| Protein GI | 256820404 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.444612 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGTAT TTATCATAGG AGGCACCTCA GGCATAGGGT TAGCATTGGC GAGCTATTAT
CACCTACAAG GCAATCGCGT AGGCGTATGT GGAAGAGATT TGCAAAAGCT CACTGATGAA
TCGCGTTTTG AGAAGTACCA AGCCGATGTA ACCAATATAG TGCAATTACA AAACGTTATA
CAGCAATTCG TAGGTGAGAG GGCTTTGTCG TTGCTCATCA ATTGTGCAGG TAGTTATGCT
GAAGATGTAG CAAATGAGAT TAGCTATGAA GAGGCTGTGG CAATGCTTCA AACCAATATT
ATGGGAGCTG TGAACTGCTT AGAAGTTGGA CGAAAAGCAA TGTGCCACAC AGGCGGACAA
ATAGTCTTAC TTGCTTCTAT TTCAGGTATT TTAGACTACC CCGAGTCAAG CCTATACACC
AAGACCAAGC GTAGTGTGAT ACAAATAGCC GATGCTTATC GCCGTGCTTT ACGTCGGTAT
GGAATCGCAA TTACTACCAT TGCTCCAGGC TATGTAAATA CCCAAAAACT ACGCGACCTC
AACCACAACG ACCTCTCTAA GAAACCTTTT CTTGTAATCG AAGCCCAAGC TGTGAGGGAA
ATCACGCAAG CTATTACTGA AAAGAAAGCA TTGCTTTTAT TCCCAAAACA AATGAAATGG
TTAATGCGTT TCCTCTCATA TATGCCCTCT TTCCTGCTTT CAAAGATAAT GTATAAGAAA
GCTCATTATA TGAAGAAATA A
|
|---|
| Protein sequence | MNVFIIGGTS GIGLALASYY HLQGNRVGVC GRDLQKLTDE SRFEKYQADV TNIVQLQNVI
QQFVGERALS LLINCAGSYA EDVANEISYE EAVAMLQTNI MGAVNCLEVG RKAMCHTGGQ
IVLLASISGI LDYPESSLYT KTKRSVIQIA DAYRRALRRY GIAITTIAPG YVNTQKLRDL
NHNDLSKKPF LVIEAQAVRE ITQAITEKKA LLLFPKQMKW LMRFLSYMPS FLLSKIMYKK
AHYMKK
|
|---|
| |