Gene Coch_1528 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1528 
Symbol 
ID8367968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp1815616 
End bp1816278 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content43% 
IMG OID644983963 
ProducttRNA/rRNA methyltransferase (SpoU) 
Protein accessionYP_003141634 
Protein GI256820355 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0566] rRNA methylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.16942 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCAAG AATTACTCAC CTATTTAGAA CATTTTATTA CCGAAGAACG CAAGGAACGT 
TTTTTACAGG TGATAAGTGC GCGTACCAAT CACTTTACGG TAGCGATGGA AGATGTATTC 
CAAATGCATA ACACCAGTGC CGTAGTGCGC ACTTGCGAAG TCTTTGGCGT GCAACAAGCA 
CACAGCATAG AAGGACGATT TGGCAAACGC CTCGATGCCA AAATAGCAAT GGGTGCTCAA 
AAATGGGTAG ACGTCTTCCG CTATAACGAC ACCCAAAGTT GTATCGATGC CCTCCGTGCC 
CAAGGTTACC AAATTGTGGC AACAACCCCA CACAAGGATG CTTATTTCCT CAACGACTTC 
GATATTAGTA AAAAGAGTGC TTTCTTCTTT GGTACAGAAA AAGAAGGGCT CTCTGAGCAA 
GTACTCTCAC AAGCTGATAC ATATTTAAAA ATTCCAATGG TAGGTTTTAC CGAAAGTTTG 
AATATCTCGG TAGCGGTAGC CATTGTCCTG CAACAGCTTA CTGATAAACT CCGCCGTAGC 
CAAGTAGCTT GGCAACTCAC CGATGAAGAA CGCCTCAGCA CTCTTATCAA TTGGACAAAG 
AAATCCATTC GCAACGTAAA AGATGTGCTA AAACGCTACG AAGAACTCAC CGCTCAAAAA 
TAA
 
Protein sequence
MNQELLTYLE HFITEERKER FLQVISARTN HFTVAMEDVF QMHNTSAVVR TCEVFGVQQA 
HSIEGRFGKR LDAKIAMGAQ KWVDVFRYND TQSCIDALRA QGYQIVATTP HKDAYFLNDF 
DISKKSAFFF GTEKEGLSEQ VLSQADTYLK IPMVGFTESL NISVAVAIVL QQLTDKLRRS 
QVAWQLTDEE RLSTLINWTK KSIRNVKDVL KRYEELTAQK