Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_1522 |
Symbol | |
ID | 8367962 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 1809475 |
End bp | 1810152 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 644983957 |
Product | PAS sensor protein |
Protein accession | YP_003141628 |
Protein GI | 256820349 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.533099 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGAAT TTAAAAGTGC TGTACCTACA ATTGCAAGAC CCACTCCTAT TGACCGTGAA GTACAGTGGG ATAAGACCAA AGTACTCATC AGTGAAACAG ATGCGATTGG TACTATTACC AAAGTGAATG ATGTGTTTTG TGAGGTATCA CACTACACTG CTGAAGAACT CATAGGACAA CCTCATAACT TGATACGCCA CCCCGATATG CCAAAACTTA TTTTTAAGCT TCTTTGGGAT AACTTAAAGG CGGGAAATAA CTTTGTGGGT GTGATTAAGA ACTTAGCTAA AACAGGAGAA TACTACTGGG TGGTTACTGA TTTTGAAATG CGTCGTGATG CATCGGGTAA TATTACACAT TACATTGGCA GAAGAAGATC GGTGCCTGAA GCAGCGATTA AAGACTATTT GGCACCTTTC TATGATTCAC TTTTGAAAAT GGAGAGAATA GGGGGTGTAG AATTGAGCAG TCGTTTCTTT AAAAACTATT TGGCTAAGCA AGGAAAAGAT TATATCGATT TTGTGATAAG TATTATGTCA GAGGGTCAAA CTAAATTTAC AGCTGAAACC GTATCGGGTG TTGATAATAA CAACGTGACA GTATCTGACG ATATTTACCA AATGGATGAC TCGAAGAATG AAAAGCGCAA GAACTTCTTC GAGCGTTTGT TTAACTAA
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Protein sequence | MSEFKSAVPT IARPTPIDRE VQWDKTKVLI SETDAIGTIT KVNDVFCEVS HYTAEELIGQ PHNLIRHPDM PKLIFKLLWD NLKAGNNFVG VIKNLAKTGE YYWVVTDFEM RRDASGNITH YIGRRRSVPE AAIKDYLAPF YDSLLKMERI GGVELSSRFF KNYLAKQGKD YIDFVISIMS EGQTKFTAET VSGVDNNNVT VSDDIYQMDD SKNEKRKNFF ERLFN
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