Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_1442 |
Symbol | |
ID | 8367874 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 1692391 |
End bp | 1694388 |
Gene Length | 1998 bp |
Protein Length | 665 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644983870 |
Product | excinuclease ABC subunit B |
Protein accession | YP_003141549 |
Protein GI | 256820270 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAATTCA ATATAGTTTC TGACTTTGCC CCTACGGGCG ACCAACCTCA GGCTATCGAC CAATTGGTAA AAGGTATAGA GCGCAACGAT AAGTACCAAG TACTATTAGG TGTTACGGGC TCTGGAAAGA CTTTTACTAT CGCTAATGTG GTGGAACGCA TTCAGCGTCC TACTCTTGTG TTGGCACATA ATAAGACGCT GGCAGCCCAG TTGTATTCTG AATTTAAGGC TTTCTTCCCC AATAACGCGG TGGAATACTT CGTCTCTTAC TACGACTACT ATCAGCCGGA AGCTTATATA CCTTCCACAG GTACTTATAT CGAAAAAGAC CTCTCTATTA ACGATGAAAT TGAAAAACTG CGTCTCAGTA CGACCTCTGC TTTGCTGTCG GGCAGGCGCG ATGTATTGGT TGTGGCATCT GTGTCGTGTT TGTATGGTAT TGGTAACCCT GTGGAATTTC AAAAGAACGT GATTACCCTC AAACAGGGTG ACGTACTCCC TCGTACCAAG CTGATGCATC GCCTTGTGCA AAGTCTCTAT GCCCGAACGA CCGCCGAATT TAGGCACGGC AACTTCCGTA TCAAAGGCGA TGTGCTTGAT GTCTTCCCAG GTTATGACGA CAACGCCTTT CGCATTCACT TTTTTGGTGA TGAAATTGAA GAGATAGAAC AGTTTGACCC TACTACTAAT CACGTGTTAG ACCACTACCA GAGCCTTAAT ATCTACCCCG CTAATATGTT CGTTACTTCC CCTGATATTC TCCAAAAAGC GATATGGAAC ATTCAACAAG ATTTGGTGAA GCAAGTAGAG TTCTTTGAGG CTTTAGGCAA ACCCTTAGAA GCCAAACGGC TGAAAGAACG CACCGAGTTC GACCTTGAGA TGATACGGGA ATTAGGGTAC TGTTCGGGTA TTGAGAACTA CTCTCGCTAT TTGGACGGTA GAGAACCAGG CACACGTCCG TTTTGCCTCA TAGATTACTT CCCCGATGAT TTCTTGATGG TTATCGACGA GAGTCACGTA ACCGTCTCAC AAGTACACGC GATGTATGGT GGCGACCGCA GTAGGAAGGA GAATCTCGTG GAATACGGTT TCCGATTGCC CGCTGCAATG GACAACCGTC CGTTGAAATT CGAGGAGTTT GAAGCACTTC AAAACCAAGT GATTTACGTG AGTGCTACCC CAGCCGATTA TGAGCTCCAG CAAACGCAAG GCGTGTACGT AGAGCAGGTG ATACGCCCCA CAGGATTGCT CGACCCCGAA ATAGAAGTGC GTCCGAGTGC CAATCAAATA GATGACCTTG TGGAGGAAAT ACAACTGCGC ACCGAAAAAG ACGAGCGTAT ATTAGTAACC ACCCTCACCA AGCGAATGGC AGAGGAACTT ACCAAATACC TCACTCGCAT TGGTATTAGG TGTCGTTACA TTCACAGTGA TGTGGATACA TTGGAACGCG TGGAGATTAT GCAAGACCTG CGCAAAGGAC TCTTTGATGT GCTCATAGGG GTAAACCTCC TCCGTGAGGG CTTAGACCTG CCCGAAGTGT CGCTCGTCGC TATCCTCGAT GCCGACAAAG AAGGCTTTTT GCGTTCCACT CGTTCGCTCA CTCAAACCGT AGGGCGGGCT GCTCGCAACG TGAATGGTAA GGCAATAATG TACGCCGATA AGATTACTGA CAGTATGCAG CGCACTATCG ATGATACTAA TTATCGTCGT GAAAAGCAAA TGAACTACAA CAAGGCACAC AACATCACGC CTCAGCCTTT GCACAAGAAG ATAGAGAATA GCCTCAGCAA GAGCCCTATA ACCGAATTTC ACTACGATCC GTCGTTTAAA GAGCGCACAG CTGCCGAAGC GCAATCGGTA TATTTATCGG CTAAGGAGTT GGAAAAGAAA ATCAAAGAAA CCCGCAAACT GATGGAGGTA GCTGCCAAAG AGCTGGATTT TGTAAAAGCT GCACAGTACA GAGATGAGCT GAAGAAATTG CAGGAATTAG CAAATTAG
|
Protein sequence | MKFNIVSDFA PTGDQPQAID QLVKGIERND KYQVLLGVTG SGKTFTIANV VERIQRPTLV LAHNKTLAAQ LYSEFKAFFP NNAVEYFVSY YDYYQPEAYI PSTGTYIEKD LSINDEIEKL RLSTTSALLS GRRDVLVVAS VSCLYGIGNP VEFQKNVITL KQGDVLPRTK LMHRLVQSLY ARTTAEFRHG NFRIKGDVLD VFPGYDDNAF RIHFFGDEIE EIEQFDPTTN HVLDHYQSLN IYPANMFVTS PDILQKAIWN IQQDLVKQVE FFEALGKPLE AKRLKERTEF DLEMIRELGY CSGIENYSRY LDGREPGTRP FCLIDYFPDD FLMVIDESHV TVSQVHAMYG GDRSRKENLV EYGFRLPAAM DNRPLKFEEF EALQNQVIYV SATPADYELQ QTQGVYVEQV IRPTGLLDPE IEVRPSANQI DDLVEEIQLR TEKDERILVT TLTKRMAEEL TKYLTRIGIR CRYIHSDVDT LERVEIMQDL RKGLFDVLIG VNLLREGLDL PEVSLVAILD ADKEGFLRST RSLTQTVGRA ARNVNGKAIM YADKITDSMQ RTIDDTNYRR EKQMNYNKAH NITPQPLHKK IENSLSKSPI TEFHYDPSFK ERTAAEAQSV YLSAKELEKK IKETRKLMEV AAKELDFVKA AQYRDELKKL QELAN
|
| |