| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0433 |
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| Symbol | |
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| ID | 8366839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 546010 |
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| End bp | 550296 |
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| Gene Length | 4287 bp |
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| Protein Length | 1428 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 644982854 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_003140557 |
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| Protein GI | 256819278 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0178007 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAGAG AAAAAAATAC AGCTGTTCCT AAATTTGATA AGATTTCGAT TGGTTTGGCC
TCTCCTGAAT CTATCTTAGC CGTTTCACGC GGTGAGGTTA CTAAACCTGA AACTATCAAC
TATCGTACTC ACAAACCTGA ACGCGACGGG TTGTTTTGTG AGCGTATTTT TGGTCCTGTA
AAGGACTATG AATGTGCTTG TGGTAAATAC AAACGCATTC GTTATAAAGG CATCGTCTGC
GACCGTTGTG GCGTGGAAGT AACCGAGAAA AAAGTACGCC GCGAAAGAGT AGGACATATC
AACCTTGTGG TGCCTATCGC TCACATTTGG TATTTCCGCT CATTACCTAA CAAAATAGGT
TATTTGTTAG GGCTTCCTTC GAAAAAGTTG GATATGATTA TCTACTACGA GCGCTATGTA
GTTATCCAAC CAGGTATTGC CAAAGGACCA GAAGGTGAAG ATTTACAATA CTTAGACTTC
CTTTCAGAAG AAGAATATCT CGCTATTACT GAGAGTCTTC CTGCTGATAA CCAATATTTA
GAAGATACTG ACCCTAATAA GTTCATTGCT AAAATGGGGG CTGAGTGTCT TCTTGAACTC
TTAGAACGTT TGGATTTAGA CGCACTTTCT TACGACTTGC GTCACAAAGC TAATAATGAA
AGTTCTAAAC AACGCAAAAC TGAAGCTCTT AAACGCTTAC AAGTGGTAGA GGCGTTCCGC
GAATCTCAAA GAAACCGCGA GAACAAGCCT GAATGGATGA TAATGAAGGT GATTCCTGTA
ATTCCCCCTG AATTACGCCC GTTAGTACCG CTCGATGGGG GACGTTTTGC GACTTCCGAC
CTTAACGATC TTTACAGACG TGTGATTATT CGCAATAACC GTCTAAAACG CTTGATGGAA
ATCAAAGCTC CTGACGTGAT TTTGCGCAAT GAGAAACGTA TGCTTCAAGA GTCGGTAGAT
TCACTTTTCG ACAACACACG TAAATCATCA GCTGTAAAAA CAGAGTCTAA TCGTCCGCTT
AAATCACTTT CTGACTCATT GAAAGGTAAG CAAGGGCGCT TCCGTCAGAA CCTCCTCGGT
AAACGTGTAG ACTATTCAGC ACGTTCGGTA ATTGTGGTAG GTCCTGAACT CAAAATGTAC
GAATGCGGTT TGCCAAAGAA TATGGCAGCC GAACTCTATA AGCCGTTTGT AATACGTAAG
CTCATCGAGC GCGGTATTGT GAAAACGGTG AAATCAGCTA AGAAAATCAT TGACAAGAAA
GAGCCCGTAG TATGGGATAT CTTGGAGAAT GTAATTAAAG GTCACCCTGT ACTACTGAAC
CGTGCTCCTA CTTTGCACCG TCTGGGTATT CAGGCATTCC AACCTAAGCT CATCGAAGGG
AAAGCAATAC AGTTGCACCC GCTTGTGTGT ACAGCGTTCA ATGCCGACTT CGACGGTGAC
CAAATGGCGG TGCACTTGCC ATTAGGTCCT GAGGCTATCT TAGAGGCACA ACTCTTGATG
TTGGCTTCAC ACAATATCCT CAACCCTGCC AATGGTTCGC CTATTACTGT ACCTTCACAA
GATATGGTCT TGGGGCTTTA CTACATCACC AAAGGTCGTA AGTCTACCCC TGAATATCCT
ATTAAAGGGG AGGGTTCAGC TTTTTATTCA GCAGAAGAAG TGAATATCGC TTATAACGAA
GGGAAGCTCA GCTTAAACGC TTTTATTAAA GTGAAAGTGC GTGACCTCGA CGAAAATGGC
AATGTGTATT ACCCCGTAGT AGAAACTACC ACTGGACGTG TGCTCTTCAA TGAGCTTGTA
CCTTTGGAAG TAGGCTACAT CAACGAGGTA CTTACCAAAA AATCATTGCG TGATATCATC
GGTCGTATCC TAAAAGCTAC TAGCATTCCT GTAACGGGAG ACTTCCTTGA CAAAATCAAG
AATATGGGAT ACCGCTTTGC CTTTAAAGGC GGATTGTCGT TCAGTTTAGG CGATATTATC
ATTCCACAAG AAAAAGCTAA TATGATAGCC GAAGCTAACG GACTCGTAGA TGGTATTATG
ATGAACTATA ATATGGGTCT CATTACCAAT AACGAACGTT ATAATCAGGT GATTGACGTG
TGGACATCTA CCAATGCGCA ACTTACTGAA TTGGCGATGA AACGCATCAG TACAGACCAA
CAAGGGTTCA ACTCAGTGTA TATGATGCTC GACTCCGGAG CGCGTGGTTC TAAGGAGCAA
ATTCGTCAGC TTACCGGTAT GCGTGGTTTG ATGGCAAAAC CCAAGAAATC GAGCGTAGGG
GGTGGTGAAA TCATCGAGAA CCCTATCTTG TCGAATTTTA AAGAAGGTCT ATCTATCCTC
GAATACTTTA TCTCTACCCA CGGTGCCCGT AAAGGTCTTG CCGATACCGC TTTGAAAACA
GCCGATGCGG GTTACTTAAC TCGTCGTTTG GTAGACGTAT CGCAAGACGT AATCATCAAC
ACCGAAGATT GTGGTACCTT GCGTGGAGTA GAAGTACGTG CCCTCAAAAA GAACGAGGAA
GTAGTAGAAA CTCTTGGCGA GCGCGTTTTA GGACGTGTGT CGCTCCACGA TGTATACAAT
CCTCTCACTG AAGAACTTAT TGTGGGTGCT GGTGAAGAAA TTACTGAAAA AATAGTAGAT
AAAATAGAAG CCGCTCCTAT CGATATGATA GAAGTGCGCT CGGCACTTAC CTGTGAAGCA
AAACACGGTA TTTGTGCAAA ATGTTACGGT CGCAACCTTT CTACCGGACG TATGGTACAG
AAAGGGGAAG CCGTAGGGGT AGTTGCTGCC CAGTCTATCG GTGAACCAGG TACCCAGCTT
ACCTTGCGTA CCTTCCACGC AGGTGGGGTT GCGGGTAACG TATCAGAAGA AAATAAAACT
GAAGCCCGTT TTGACGGTGT ACTAGAAATA GAAGACTTAC GCGTAGTTCG TGGTAAAGAC
AACGAACAAA ACCCTGTGGA CGTAGTAGTG CGTTCATCTG AGCTCCGCGT GCTTGACCCT
ACTACCAAAA TGGTACTTCA AACACACGAT ATCCCTTATG GAGCGCACAT CTTTGTAAAA
GACAAAGAAG AAGTGAAAAA AGGAACTTTA CTCTTCCAAT GGGATCCCTA TAATGCGGTA
ATCATCTCGG AATACTCTGG TAAAATCGCT TATGAAGATA TCGAACAGGG AGTTACTTAC
CAAGTGGAAA TAGATGAGCA AACAGGCTTC CAAGAAAAAG TGATTGTAGA ATCGCGTAAC
AAGAAGCTGA TTCCTACCTT GCTCATCACT GATAAGAATG GTGAGACGCT CCGCTCTTAC
AACTTGCCTG TGGGTGCTCA CATTATGGTG GACAACAACA GCAAGATTGA AGAAGGTAAG
GTGCTTGTGA AAATACCGCG TAGCTCTGCC AAAGCTGGGG ATATTACAGG GGGGCTTCCT
CGTGTTACCG AGCTCTTCGA AGCACGTAAC CCATCGAACC CTGCCATCGT ATCCGAAATT
GACGGGGTAG TATCGTTCGG TAAAATCAAA CGCGGTAATA AAGAGGTAAT CGTTACCTCA
CGCTCGGGCG AAGAACGCAA ATACTTGGTG AAATTATCGA GCCAAATCTT GGTACAAGAA
AACGACTTTG TACGTGCAGG TAAACCACTT TCTGACGGCT CTGTAACACC TGATGATATC
TTGCGTATTA AAGGACCATC GGCAGTACAA CAGTATTTAG TAAACGAAGT ACAAGAGGTA
TATCGCTTGC AAGGGGTGAA AATTAACGAT AAACACTTTG AGGTTATCGT CCGCCAGATG
ATGCGTAAAG TGGAAATCCA AGACCCAGGT GATACTCTTT ACCTCGAAGG TCAGTTGGTT
CACAAAGACG ACTTTATAGA AGAAAACGAC CGCTTGTTTG GTAAGAAAGT AGTAGAAGAT
GTCGGAGATT CTGAAAACTT AAAAGCGGGA CAGATAGTGA GCTTACGTGA ATTGCGCGAT
GAGAACTCAC TACTCAAACG CTCCGATAAG AACTTGGTAA TCGCTCGCGA TGTGATTCCT
GCTACTGCTA TGCCAGTGCT ACAAGGTATC ACTCGTGCAT CGCTACAAAC CAAATCGTTT
ATCTCAGCAG CTTCTTTCCA AGAAACAACC AAGGTATTGA ACGAAGCAGC GGTAAGTGGT
AAGGTAGACT TCCTCGACGG CTTGAAAGAA AATGTAATCG TAGGTCACCG TATACCAGCA
GGTACTGGAC TTAAAGAATA CGAGAAAATC ATCGTAGGCT CTAAAGCTGA TTTAGAACCC
GTAGTAGAAA AGAAAAAATC GAGATAA
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| Protein sequence | MAREKNTAVP KFDKISIGLA SPESILAVSR GEVTKPETIN YRTHKPERDG LFCERIFGPV
KDYECACGKY KRIRYKGIVC DRCGVEVTEK KVRRERVGHI NLVVPIAHIW YFRSLPNKIG
YLLGLPSKKL DMIIYYERYV VIQPGIAKGP EGEDLQYLDF LSEEEYLAIT ESLPADNQYL
EDTDPNKFIA KMGAECLLEL LERLDLDALS YDLRHKANNE SSKQRKTEAL KRLQVVEAFR
ESQRNRENKP EWMIMKVIPV IPPELRPLVP LDGGRFATSD LNDLYRRVII RNNRLKRLME
IKAPDVILRN EKRMLQESVD SLFDNTRKSS AVKTESNRPL KSLSDSLKGK QGRFRQNLLG
KRVDYSARSV IVVGPELKMY ECGLPKNMAA ELYKPFVIRK LIERGIVKTV KSAKKIIDKK
EPVVWDILEN VIKGHPVLLN RAPTLHRLGI QAFQPKLIEG KAIQLHPLVC TAFNADFDGD
QMAVHLPLGP EAILEAQLLM LASHNILNPA NGSPITVPSQ DMVLGLYYIT KGRKSTPEYP
IKGEGSAFYS AEEVNIAYNE GKLSLNAFIK VKVRDLDENG NVYYPVVETT TGRVLFNELV
PLEVGYINEV LTKKSLRDII GRILKATSIP VTGDFLDKIK NMGYRFAFKG GLSFSLGDII
IPQEKANMIA EANGLVDGIM MNYNMGLITN NERYNQVIDV WTSTNAQLTE LAMKRISTDQ
QGFNSVYMML DSGARGSKEQ IRQLTGMRGL MAKPKKSSVG GGEIIENPIL SNFKEGLSIL
EYFISTHGAR KGLADTALKT ADAGYLTRRL VDVSQDVIIN TEDCGTLRGV EVRALKKNEE
VVETLGERVL GRVSLHDVYN PLTEELIVGA GEEITEKIVD KIEAAPIDMI EVRSALTCEA
KHGICAKCYG RNLSTGRMVQ KGEAVGVVAA QSIGEPGTQL TLRTFHAGGV AGNVSEENKT
EARFDGVLEI EDLRVVRGKD NEQNPVDVVV RSSELRVLDP TTKMVLQTHD IPYGAHIFVK
DKEEVKKGTL LFQWDPYNAV IISEYSGKIA YEDIEQGVTY QVEIDEQTGF QEKVIVESRN
KKLIPTLLIT DKNGETLRSY NLPVGAHIMV DNNSKIEEGK VLVKIPRSSA KAGDITGGLP
RVTELFEARN PSNPAIVSEI DGVVSFGKIK RGNKEVIVTS RSGEERKYLV KLSSQILVQE
NDFVRAGKPL SDGSVTPDDI LRIKGPSAVQ QYLVNEVQEV YRLQGVKIND KHFEVIVRQM
MRKVEIQDPG DTLYLEGQLV HKDDFIEEND RLFGKKVVED VGDSENLKAG QIVSLRELRD
ENSLLKRSDK NLVIARDVIP ATAMPVLQGI TRASLQTKSF ISAASFQETT KVLNEAAVSG
KVDFLDGLKE NVIVGHRIPA GTGLKEYEKI IVGSKADLEP VVEKKKSR
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