Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0423 |
Symbol | rplA |
ID | 8366829 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 533295 |
End bp | 533984 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644982844 |
Product | 50S ribosomal protein L1 |
Protein accession | YP_003140547 |
Protein GI | 256819268 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0081] Ribosomal protein L1 |
TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000383524 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAAAT TAACAAAGAA ACACAAAGAA GCTCTTGCAA AAGTTGATAG AAACAAACTC TATTCATTAA AAGAGGCTTC AGCATTACTC AAAGAAATCA CTTACACTAA ATTTGATGCT TCTGTGGACA TTGCAGTGCG TTTAGGGGTA GACCCACGTA AAGCAAACCA AATGGTGCGA GGCGTAGTTA CGCTTCCTCA CGGAACAGGT AAAGACGTGC GAGTGCTTGC CTTAGTAACT CCAGAGAAAG AAGCAGAAGC TAAAGCTGCT GGAGCTGATT ATGTAGGGCT TGATGAATAT CTACAAAAGA TAAAAGATGG CTGGACAGAT GTAGACGTAA TCGTTACTAT GCCAGCAGTA ATGGGTAAGT TAGGTCCTTT AGGACGAGTA TTGGGTCCTC GAGGCTTGAT GCCAAACCCT AAAACTGGTA CTGTTACTAT GGAAATCGGG AAAGCTGTAC AAGAAGTAAA GTCTGGTAAA ATCGACTTCC GCGTAGACAA AACAGGTATC GTTCACGCCT CTATCGGTAA AATATCCTTC ACTGCCGATA AGATTGTAGA CAACGCCAAT GAGTTAATTC AAACATTAAT AAAGATGAAA CCTACCGCTG CTAAGGGTAC GTATATGAAA TCGATTTATC TTTCATCTAC TATGAGCCCA AGTATTGCAG TAGATACTAA AACAGTTTAA
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Protein sequence | MAKLTKKHKE ALAKVDRNKL YSLKEASALL KEITYTKFDA SVDIAVRLGV DPRKANQMVR GVVTLPHGTG KDVRVLALVT PEKEAEAKAA GADYVGLDEY LQKIKDGWTD VDVIVTMPAV MGKLGPLGRV LGPRGLMPNP KTGTVTMEIG KAVQEVKSGK IDFRVDKTGI VHASIGKISF TADKIVDNAN ELIQTLIKMK PTAAKGTYMK SIYLSSTMSP SIAVDTKTV
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