| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0252 |
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| Symbol | |
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| ID | 8366657 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 326800 |
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| End bp | 329982 |
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| Gene Length | 3183 bp |
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| Protein Length | 1060 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644982672 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_003140376 |
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| Protein GI | 256819097 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACAC CTTCAGCAAA TTATACTATA TACAACGCTT CGGCAGGGTC TGGAAAGACC
TACAGTCTGG TGAAAGCTTA TCTGAGAATT ATTCTCGGCA GTAAGCAACC CGATTTGTTT
AGGCAGTTAC TCGCTATTAC CTTTACCAAT AAGGCGGTTT TTGAAATGAA GAACCGCATC
ATAGAGTTAT TAGGGGTATT CAGTGAGGAC AAAATGCTCA CTAAACCTCA CGCTATGTTT
ACTGAATTAG CAAAGGAATT GAATCTCCCC GACGAAGAAC TGAGAACGCG TTCGGCTAAA
GCTTTGGAGC ATATACTGCA CAACTACGCG GCTTTTAATA TCAGTACTAT CGATGGGTTT
AACCACCAAC TGATACGCCA CTTCTCACAG GATTTGCATC TCAATCCTTT CTTTGAAGTA
CAGTTGGATA GCAAGGCTTT ACTAGAGCGA GCGGTTGATA ATTTGATGAA TCAGGCAGGA
AACGACCCCG AGCTTACCCA ATTGCTCATC GATTTCGCCA ATGAAAAGAT AGATGACGAC
AAGAGTTGGG ATACTACTAA AGAATTATTA GGCGTAGCCG AAATGCTCAC CAATGAGAAC
CATTACAAGC AATTACAATC GCTGAAAGAC AAGGAAATAC CCGATTTTCT AATTCTTAAA
AATACCTTAC TCAAACAACG CAACAATGCC CTGAAAAGCA TTAAAACTTC TGCCCAAGAC
TTTATGCAAC TGATGTGTGA GCACGGTTTG GATAAAGGTG CTTTTAATGG AGGACATTTA
TACAAATTCT TCGATAACCT CACTGCCGAC AACCCTAAGG AACCTTCGTG GGGCAGTGGT
TGGCAAAACA ATCTATTAGA AGGCGAACCT CTTTATTCTG GTTCAGCGGC TAAGAAGTAC
GACACTGCCC TGATAGATAG TTTGCAAGAG ATGATTGCCA ACTTGTTTTT GGCAATCAAA
AAAGCTTTTG GAGCTCTTGC CTTTGCGAAC AACGCGCTGA GATATGTTGT GCCTTTGGCT
TTGCTCAACC GTATACAAAA AGAAATAGAG ACCATTAAAG AAGAAGAAAA CATCTTGCCT
ATATGGGAGT TCAACGGAGT AATTTCCTCA GAGCTCAGCA ACCAGCCTGC ACCTTTTATC
TACGAGCGTA TAGGTGAGAA ATTCCGCCAC TATTTTATCG ATGAGTTTCA AGACACCTCA
GTACTGCAAT GGCAGAACTT TATACCGCTT ATCCTCAATG CAGTGCAAAG TGAAGTGAAC
AATAAGTGCG GGTCGGTATT ACTTGTAGGC GATGCCAAAC AATCGATTTA TCGTTGGCGA
GGAGGAAAAG CGGAACAGTT TATGAGTCTG TATAACAATG AAGTAAACCC TTTCCGCATC
AAAGGAGAAG TAAAAGACCT CAATGAAAAC TTTCGCAGTT TAGAAGCCAT TATCGATTTT
AACAACCATT TTTTTAAGTT TGCAGCAGAC CTTTTCCAAA GTGAGACCTA CAAAGAACTT
TACAAAAACT CTACACAGGA ATATCCCAAA AACAAAAAAG ACCAATCCTT ACCCGAGGGC
TATTTCAATC TTTCCTTTAT AGAAGTTGGA GAAGAAGAAG TGCCTACAGA AGAAGACAAT
AGCAATGTTG TAGCACTTTC ACCGCGCGAA CGGAGTTATT GTGAAGCGAT TTTAGAGAAA
ATAGAACACG CTAACCGAGC AGGGGCAGCC GATAAGGATA TTACTATATT GGTGCGCACC
AACCGCGAAG GAGCAGCCGT TGCCTCTTTC CTTTCAGAAC ACCAAAGAAA TGTAATTTCC
CCCGATTCGC TATTGCTGAA AAACGTGGCA TCAGTACAAT TTCTCGTCAC CCTATTACGT
CTGCTTTATC ACCCTGAAAG TGAAGAACTC AAACTGCAAT TGCTCTTTGA TTATCTTCGT
TTTAAAGAAA CTAAAGACCC TCACCTCTTC CTCAGCAAAT ATGTAGAGAA ACCCGTAAAT
ACTTTCCTTG CCGATTTTCA CTTCTCCATA GAGCTGTTCA ACCAATATTC TTTATACGAA
GGAGTAGCTT TGGCGGTGAA TTGTTTTGAC CTCGCTCGCT CTTCCGATGC TTATCTCACT
CACTTTATGG ATATTGTATT CGATTTTAAG AATGCGCGCA AAGGAGGCTT AGCCGATTTT
CTGGAGTTTT GGGACGACCA ACAAGAAAAA CTGAGTATCA GTTCTCCCGA AGGGTTGAAT
GCTATTACTG TAATGACGGT TCACAAGAGC AAAGGACTTT CTGCCCCCGT GATTATCTAC
GCTTTCGCCG ATAGCAAACT CATCGATACA CATACTGAAA AACTTTGGTT TCCCGTAAAT
CACGAACAGT TTAACGGTTT TGACTATCTG CTGGTAAACA GCAATAAAAG CTTAGTGAAT
TACGACGCAC AAGCCGAAGA GCTTATGATG CAACTACACG AACAAAACCT CCTCAACCAG
CTAAATGTGT TATATGTAGC GATGACGCGT CCCGAATCTT TCCTCTATAT AATCACCTCA
CTATCCAAAA GTAGTGCAGG AACGTATGGC ACGCTCTTTA GAGAGTTTTT AGAAGAAAAC
AAACAGTGGA ATGAGAATGT AGTGGAATAT ACCTTTGGAA ACCCTGTATT TCCTGAGAAG
AAAGAGAATG CAGCAGCTGA AGAATCACCT ATTCCTTTCC AAAAAGGTTG GCAGTATCCG
AACTACAAGA TTGCGACAGG GGCTTCCCTG CTATGGGACA CTCACCAACA AGAAGCCTTG
GAGCGCGGTA ACCTGATTCA TGAGTTATTC TCAAAAATCA CTTACGCCAC CGACCTCGAC
ACTGTACTCA ACGATGCGCT ACAAGAGGGT ACTCTCACTG CCGAACAATA TGAGCTATTG
CAACCCCAAA TGGAGCGATT ACTCAACGAC AGCACTTTAG CACCTTTCTT TAGTGAGGAC
TACGAATACT TTATGGAACG TGAGTTTATA GATGCTAATG GCAACTATTT CCGTCCCGAC
CGACTTGCCT ACAACCCAAA CACTCGCGAA GTCTATATCA TAGATTACAA AACTGGACAA
CCCAACCCTC AGTACCACCA ACAGCTATCG TACTACGCCC AAAACCTGCA AGCTATTGGC
TGGCAAGTAA AAGGAAAATA TTTAGTGTAT TTGGATTTGG GAAAAGTGGT AAAGATTCTC
TAA
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| Protein sequence | MNTPSANYTI YNASAGSGKT YSLVKAYLRI ILGSKQPDLF RQLLAITFTN KAVFEMKNRI
IELLGVFSED KMLTKPHAMF TELAKELNLP DEELRTRSAK ALEHILHNYA AFNISTIDGF
NHQLIRHFSQ DLHLNPFFEV QLDSKALLER AVDNLMNQAG NDPELTQLLI DFANEKIDDD
KSWDTTKELL GVAEMLTNEN HYKQLQSLKD KEIPDFLILK NTLLKQRNNA LKSIKTSAQD
FMQLMCEHGL DKGAFNGGHL YKFFDNLTAD NPKEPSWGSG WQNNLLEGEP LYSGSAAKKY
DTALIDSLQE MIANLFLAIK KAFGALAFAN NALRYVVPLA LLNRIQKEIE TIKEEENILP
IWEFNGVISS ELSNQPAPFI YERIGEKFRH YFIDEFQDTS VLQWQNFIPL ILNAVQSEVN
NKCGSVLLVG DAKQSIYRWR GGKAEQFMSL YNNEVNPFRI KGEVKDLNEN FRSLEAIIDF
NNHFFKFAAD LFQSETYKEL YKNSTQEYPK NKKDQSLPEG YFNLSFIEVG EEEVPTEEDN
SNVVALSPRE RSYCEAILEK IEHANRAGAA DKDITILVRT NREGAAVASF LSEHQRNVIS
PDSLLLKNVA SVQFLVTLLR LLYHPESEEL KLQLLFDYLR FKETKDPHLF LSKYVEKPVN
TFLADFHFSI ELFNQYSLYE GVALAVNCFD LARSSDAYLT HFMDIVFDFK NARKGGLADF
LEFWDDQQEK LSISSPEGLN AITVMTVHKS KGLSAPVIIY AFADSKLIDT HTEKLWFPVN
HEQFNGFDYL LVNSNKSLVN YDAQAEELMM QLHEQNLLNQ LNVLYVAMTR PESFLYIITS
LSKSSAGTYG TLFREFLEEN KQWNENVVEY TFGNPVFPEK KENAAAEESP IPFQKGWQYP
NYKIATGASL LWDTHQQEAL ERGNLIHELF SKITYATDLD TVLNDALQEG TLTAEQYELL
QPQMERLLND STLAPFFSED YEYFMEREFI DANGNYFRPD RLAYNPNTRE VYIIDYKTGQ
PNPQYHQQLS YYAQNLQAIG WQVKGKYLVY LDLGKVVKIL
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