Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0227 |
Symbol | |
ID | 8366632 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 298370 |
End bp | 301513 |
Gene Length | 3144 bp |
Protein Length | 1047 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644982647 |
Product | TonB-dependent receptor |
Protein accession | YP_003140351 |
Protein GI | 256819072 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.809994 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAGTA GAAAGATAAA CAAGCGCATT TTACTATCGC TTTTGCTCTG CAACTGTTCG GGTGCTCTTT TCGCCCAACA AGTAAAAGGA GTGGTGAAAG CAAAATCCGA CAACAGCCCT ATGATGGGTG TAAGTGTGGT GGTAAAGCAC AAAACAGTAG GTGCTTCTAC TGATTTCGAC GGGAATTATA CCCTTCAACC CGTTGTAGCC ACCGATAGTT TGGTCTTTTC TTATATAGGC TACAAATCCC AAACCGTAGC CGTGAAAGGA CGCAAGGAAA TAAACGTAAG TTTAGAAGAA GAGGTGACTA CTCTCGAAGG AGTTACCGTT TCTGTAGGGT ATCGTACTGA ACGTAAAACC GACCTTACCG GTGCAGTATC AGTAGTAAAG GTAAACGAGA TGATGTCTAC TGCCGAAAAC AACCCTATGA AAGCCCTCCA AGGTCGTGTA GCAGGTATGC AAGTAACCGA TAATGGGGGT CCTGCTGGTA AAGCTACCAT TCGCATTCGC GGTATCGGTA CACTTAATAA CAACGACCCT CTTTATATCA TCGATGGAGT ACCTACTCAG GGCGGTATGC ACGAGCTGAA CTCTAACGAT ATCGAGAGTA TACAAGTGTT GCGTGACGCT TCGGCAGCAA GTATCTACGG GTCACGTGCT GCCAATGGGG TCATCGTTAT TACTACCAAA AAAGGTAGAA ACGGAGTGTT AAAGGTAGAT TTCGACCATT ATACTACCGT TTCGATGTTT CACTCTCGTA TGAAGATGCT CAATGCTAAT GAGTATGCAC AAGTGCTTTG GAAAGCAGCC GTAAACCGTG GTAACGACCC TAACCAAAAC GCTTTAGGTA TTCACTACGA TTATACTACC GATGCCAATG GTCACAGCAC CCTTAATAAT TTGTATTATC CACGTCAGTA TTTCGATAAG TCAGGAAGCC CTATGCTCCC TTCTAATACC GATTGGTTCA AGGAAATCAC TCGTATGGGG GTAACTGAAT CTTATAACCT TTCGGTTACC AATGGTACTG AAAAAGGTAA CTACTTCCTT TCGTTAGGCT ATTACAACAA CGATGGTTTG GTAAAGAATA CCGATTTCTC TCGCCTCTCT GCGCGTATCA ATACCGATTA CAAACTCTTT GGCGATGTAG TAACCATAGG TGAAAACTTC ACTGTAAACC GTACCAGCGA GGTAGAGCAA CCTTACCAAA TTACCGAAGC AGCAATGATA GCTGTACCTT TCATTCCGGT ACGCACTCAA GACGGTAAAC ATTGGGGAGG TCCTGTAAAT GGGTTGCCCG ACCGTCAGAA CCCTGCTCGC TTAGTAAACG ACAATAAGAA TAATCGTTAT AACTACTGGC GTATGTTCGG GAATGCTTTT GTAAACATTA AACCTATTGA TAAGCTCAAT ATCCGTTCTA ACTTTGGGGT AGATTACGGT AATTTCTATA AACGTACACT CAATCATTCG TATATTTCCG GTTTTATGGA AGAAGGCAAA GAAAAAACCT TCTCTCAACT CGAACAATCT CACTGGACGA AATGGAACTG GGCAAATACA GCTACCTACG ACTTCGAGCT TGGTAAGAGT CGATTTGAAA CCTTAGCAGG TATGGAAATG TTCTCACAAG ATGATATAAA CTTCTCTGTA AAAGGTACTA CTCTTGCCTT AGAAACTCCT GAATATATGT GGCCTAATCT CGCTACAGGA GGTATTACAG GAGGTGGTGG AGCTACCGGT TATAAGTTGC TTTCTTTCTT CGGAAAAATC AACTATGCTT TTGATAACAA ATACCTCGCT TCAGCTACTC TTCGTCACGA TGGTTCTTCT CGCTTTGCCA AAGAGAACCG CTGGGGTACT TTCCCTGCTT TCAACTTGGG TTGGCGTCTT TCTCAAGAAG CCTTTATGGA GAATATTCGC AATACCGTTT CTGAAATCAA ATTGCGCTTC GGTTGGGGGC AAAACGGTAA CCAAGAAATC GGTAACTACT CTATTTACGA TATTTACGAT CCTTACTATG GGGTAACAGG CGACTATATT TGGTCTGGAA CAGGTATTTG GAATACCTCT TACGATATCG AAGGAAAAGG CTCTGGTCAG TTAGCTTCTG GTTTCCGTCG CAGTCGTCTC GGTAACAAAG ATCTCAAATG GGAAACTACC ACACAAACCA ACTTCGGGTT AGACTTCGGT TTCTTTAATA ACAATCTCTA CGGTTCGGTA GAATACTATA TCAAAAAGAC CAAAGACATC TTGGTAGAAC CTCCTTATGC AGGTATCAAG GGTGAAGGTG CTACCCAATG GGTAAATGGT GCTGGTATGG AAAACAAAGG TTGGGAAGTA TCAGTAGGTT ATCGTAACGA GACCAAAGGC GGACTCAAAT ACGATATCAA TGCCAACGTT TCAACCAATA AAAATAAAGT TACTGAATTA CCAGAATCTG TAGTCAATGC TTACGGCGGA AATGGTAAAT GGGATAATAT CTTAGGTCGT CCTTATCAAT CTTATTACGG TTATGTAGCT GATGGTATCT TCAAAACCCA AGAAGAACTC GATCAGCACC CTATACAAAA CGGTAAAGGT ATTGGTCGTA TCCGCTACCG CGATTTGAAT AACGATGGAG TAGTAAACGA AGACGACCGC ACTTGGATAG GGACTCCTTA CCCTGATTTT ATCTACGGTC TCAATCTCAA CTTAGAGTAC AAAAACTTCG ATTTTACCCT CTTCTTGCAA GGCGTACAGA ATGTCGATAT TATCAACGAT GTGAAAAAAC ATACTGACTT TTGGAGTGTG GTGGATACCT ACTCCAATAA AGGACGCCGT TTGCTCGATG CTTTCGACCC CGTTACCAAT CCTAGTTCCG ATATTCCAAG TGTAGCTTAT ACCGATGATA ATAACGAAGG GCGTATGTCT ACTTACTATG TAGAGAATGG CTCTTACCTA AAACTTCGTA ACGTACAGTT AGGCTATACT TTACCTAAAG AAGTATCCGA AAGAATTAAG CTCAGCAAGT TGCGCTTGTA TGTAAGCGGT CAGAATCTCT TTACTATCAA GAGCAAATCG TTTACAGGTA AAGACCCTGA AAACCCTAAT TATGGTTATC CTATCCCAAT AACATTCACT ATGGGATTGA ATGCTAGCTT TTAA
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Protein sequence | MMSRKINKRI LLSLLLCNCS GALFAQQVKG VVKAKSDNSP MMGVSVVVKH KTVGASTDFD GNYTLQPVVA TDSLVFSYIG YKSQTVAVKG RKEINVSLEE EVTTLEGVTV SVGYRTERKT DLTGAVSVVK VNEMMSTAEN NPMKALQGRV AGMQVTDNGG PAGKATIRIR GIGTLNNNDP LYIIDGVPTQ GGMHELNSND IESIQVLRDA SAASIYGSRA ANGVIVITTK KGRNGVLKVD FDHYTTVSMF HSRMKMLNAN EYAQVLWKAA VNRGNDPNQN ALGIHYDYTT DANGHSTLNN LYYPRQYFDK SGSPMLPSNT DWFKEITRMG VTESYNLSVT NGTEKGNYFL SLGYYNNDGL VKNTDFSRLS ARINTDYKLF GDVVTIGENF TVNRTSEVEQ PYQITEAAMI AVPFIPVRTQ DGKHWGGPVN GLPDRQNPAR LVNDNKNNRY NYWRMFGNAF VNIKPIDKLN IRSNFGVDYG NFYKRTLNHS YISGFMEEGK EKTFSQLEQS HWTKWNWANT ATYDFELGKS RFETLAGMEM FSQDDINFSV KGTTLALETP EYMWPNLATG GITGGGGATG YKLLSFFGKI NYAFDNKYLA SATLRHDGSS RFAKENRWGT FPAFNLGWRL SQEAFMENIR NTVSEIKLRF GWGQNGNQEI GNYSIYDIYD PYYGVTGDYI WSGTGIWNTS YDIEGKGSGQ LASGFRRSRL GNKDLKWETT TQTNFGLDFG FFNNNLYGSV EYYIKKTKDI LVEPPYAGIK GEGATQWVNG AGMENKGWEV SVGYRNETKG GLKYDINANV STNKNKVTEL PESVVNAYGG NGKWDNILGR PYQSYYGYVA DGIFKTQEEL DQHPIQNGKG IGRIRYRDLN NDGVVNEDDR TWIGTPYPDF IYGLNLNLEY KNFDFTLFLQ GVQNVDIIND VKKHTDFWSV VDTYSNKGRR LLDAFDPVTN PSSDIPSVAY TDDNNEGRMS TYYVENGSYL KLRNVQLGYT LPKEVSERIK LSKLRLYVSG QNLFTIKSKS FTGKDPENPN YGYPIPITFT MGLNASF
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