Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0113 |
Symbol | |
ID | 8366515 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 134670 |
End bp | 135800 |
Gene Length | 1131 bp |
Protein Length | 376 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644982532 |
Product | ABC-2 type transporter |
Protein accession | YP_003140239 |
Protein GI | 256818960 |
COG category | [V] Defense mechanisms |
COG ID | [COG0842] ABC-type multidrug transport system, permease component |
TIGRFAM ID | [TIGR00025] ABC transporter efflux protein, DrrB family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.816984 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAATTC GCCCACCTAT TAATATGAAA CAGCTCATCG CCTTTATACG CAAGGAATTC TATCACGTAT TCCGCGACCG TCGCACGCTA CTGATACTCT TCGGTATCCC CATAGCGCAG ATTATCCTTT TCGGTCAAGC CCTCAGCAGC GAAGTCAAGA ATATTGGTAT CGCTGTATTA GATGAGGCAA ACAACACTTA TAGCCAAGAA ATCACACACC GCTTGCAGGC AAGTCCGTAT TTTAAGCTGA AAGAGCCTCT GTTCCGTTAC GACCAAGTAG AAGACCAATT CAAGCGTGGC ACCATAAAAG CGGCGCTCAT CTTCCCTCCC GATTTCGGCA AAGATCTCTA CACCTCCAGT GGTACCTCGC TACAACTCAT CACCGATGGG AGCGACCCCA ATACGGCTAA AACAGTGCAG AACTACCTTT CGGCTATGGT AGCGAGCTAT CAGCAAGAGC TGAACCCTGC TGTGCAACTA CCCTACCAGA TAACCGTTGA AAACCGAATG CTGTACAACG AGGAGCAAAA TGGCTCTATG AACTTCGTCC CTGGGGTGAT TGCGCTCGTC TTTATGATAG TGAGCACTGC CCTCACCTCG GTAGCGGTAG TGCGTGAAAA AGAGTTGGGT ACTATGGAAA TCCTTTTGGT ATCGCCTTTC AAACCTATAA TGATACTCAT TGCTAAAGCC GTTCCTTACC TTATTCTCTC GCTCATCAAC TTCACCGTGA TACTCCTGCT ATCGGTCTAT ATGCTCGATG TCCCGATACG TGGCAATTTG CTGTTGCTTT ACGCCGAGAG CACCTTGTTT ATCATCATCT GTTTGTCGTT GGGGCTACTC ATATCCACCG TTACCGCCTC ACAGCAAACG GCTATGCTCA TCGCTATGAT GGGAATGATG CTCCCTACGG CTTTCTTTAC CGGCTTTATG TTCCCCATAG AGAATATGCC CCTTGTTTTT CAAGGAATAT CCAAAGTCTT CCCCTCTAGT TACTACTACG CTATCGTAAA GAAAGTAATG CTCAAAGGAT TGGATTTCAC TTACGTATGG AAAGAAACGC TGATATTAAT AGCAATGGCG GTAATTTTCT TAAGCCTTGC AATGAAGAAG TTTAAGATTA GATTACAATA A
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Protein sequence | MAIRPPINMK QLIAFIRKEF YHVFRDRRTL LILFGIPIAQ IILFGQALSS EVKNIGIAVL DEANNTYSQE ITHRLQASPY FKLKEPLFRY DQVEDQFKRG TIKAALIFPP DFGKDLYTSS GTSLQLITDG SDPNTAKTVQ NYLSAMVASY QQELNPAVQL PYQITVENRM LYNEEQNGSM NFVPGVIALV FMIVSTALTS VAVVREKELG TMEILLVSPF KPIMILIAKA VPYLILSLIN FTVILLLSVY MLDVPIRGNL LLLYAESTLF IIICLSLGLL ISTVTASQQT AMLIAMMGMM LPTAFFTGFM FPIENMPLVF QGISKVFPSS YYYAIVKKVM LKGLDFTYVW KETLILIAMA VIFLSLAMKK FKIRLQ
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