| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1708 |
|---|
| Symbol | |
|---|
| ID | 5708495 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 1785601 |
|---|
| End bp | 1787169 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641276217 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_001541521 |
|---|
| Protein GI | 159042269 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGGTA AGCCTAATTT ATTCCTAAGG CAGAGCAGCG GTCTTGTTAG AGAGGTTGGA
CCATTGGCAG CATTACTAAT GAATACCGCA TACATTACTT ACCAGTCAGG TTACCTACTG
TTAATCAGTA GTATTGTGAA CTTCCCCTTT GGAAATCCAA TACTGGCGTT GATACTTGGC
TTCATAACCT TCGCCCCCAT GGCCTATTTA ATCAACTTCA TTGGTTCAAC GTACTATAGG
ACAGCCAGTG ACTACGTGTT CATGAGCCGT AACCTTGAGC CTAGGATTGG GTTCGCAAGC
CTACTCATGT TTACTGTTGA TCAAATGTTC TTTAATGCAG TATCCATGGT TTTTGCATTA
ACCACGGCGC TTGGCCCATC ATTATATGCC ATAGCCGTTT CCTTAGGTGA TAAGGGATTG
GTTAATGTTG CTAATTTAGT GACTAGTAAT CCAGTGGTAA TATTCACAGT GGGTGCCATT
ATGCTGGCCG TGATTATATT GATTAACATG GTATCTGTTA AGGCTGGTAA GTACCTTTCA
TCAGCAATAT CACTAATCGC CACAGTAACA TTCATATTAA CTATGATTAT TCTTTACCTA
TATGGAGGTG AGTTACCCAC GGTAATTAAT AGTATTGCCC CAGGGTTCTA TGGTAAGGCC
ATTGAGGCTG ATTTAAGCCT ACCTAAGGGT AATGTGATCT ATGGGACAAT AGCCCTATTA
CCCTACATGG CCTACATTTT CCCATACACC AACTTCATAA TAACCATAGG TGGCGAGGTT
AAGAGGGAAG CGGGTACAGT ACCATTAGCC GTAATAGGCA CCTATGTACT AATTACAGTA
TTAGTTGGGT TTGGATTATG GGCAACAATA GGTGGTTTAG GCCTAAACTT CATTAATGGC
GCCTTCGCAG TATATTATGG CCTAGTGCCT AATGTATCAT GGCCAAGCAA CATGCCACCA
CCGTATCCGC CCGCCCTGGC GATACTGCTT ATTAAGAACC CGGTGATGCA GTGGATTATA
GCTATAGGCT CCCTCACATG GTACATTAAC TCACCGAGCA CCATAGTGCT TCAAATAGCA
CGGTACTTAT TCGCCATGTC CTTCGATAGG ATTCTTCCAG GCTTTATAGC CTATGTTAAC
CCAAGAACCC ACACACCCGT AATAGCCCAT GGTTTGGATT TAGCAATATC ATTAATCATA
ATGTACCTGT ACGTGTTCAG TGTTATACCA GCGTTATCAG CAACAATGGA TATTAGCACC
GTGGTGACAA TACTAATGTA CTTCATAATA TTATCGATAA CGGCCGTAGC CTATGGTGTT
AAGAGGAGGA ATACGTTAAT CACCATAATT GGCCTATACT TAACAGGTTA CTTCACCTGG
GTAAGTTACA TGGAGGTAAG CAATCCGCTA GTCTACCTAT TTACCCCAAT AACAAGCGCC
CTAATATTCG CATTCTTCAT AGCGGTATTC GCAGCTGGAG TAATAATATT TGAAGTAGCC
AGGTACATTA GGGCACGTAG GGAAGGTATA GACTTAATGA TCACATTTAA GGAAATACCA
CCTGAATAA
|
|---|
| Protein sequence | MGGKPNLFLR QSSGLVREVG PLAALLMNTA YITYQSGYLL LISSIVNFPF GNPILALILG
FITFAPMAYL INFIGSTYYR TASDYVFMSR NLEPRIGFAS LLMFTVDQMF FNAVSMVFAL
TTALGPSLYA IAVSLGDKGL VNVANLVTSN PVVIFTVGAI MLAVIILINM VSVKAGKYLS
SAISLIATVT FILTMIILYL YGGELPTVIN SIAPGFYGKA IEADLSLPKG NVIYGTIALL
PYMAYIFPYT NFIITIGGEV KREAGTVPLA VIGTYVLITV LVGFGLWATI GGLGLNFING
AFAVYYGLVP NVSWPSNMPP PYPPALAILL IKNPVMQWII AIGSLTWYIN SPSTIVLQIA
RYLFAMSFDR ILPGFIAYVN PRTHTPVIAH GLDLAISLII MYLYVFSVIP ALSATMDIST
VVTILMYFII LSITAVAYGV KRRNTLITII GLYLTGYFTW VSYMEVSNPL VYLFTPITSA
LIFAFFIAVF AAGVIIFEVA RYIRARREGI DLMITFKEIP PE
|
|---|
| |