Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cmaq_1371 |
Symbol | |
ID | 5709866 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Caldivirga maquilingensis IC-167 |
Kingdom | Archaea |
Replicon accession | NC_009954 |
Strand | - |
Start bp | 1444760 |
End bp | 1446580 |
Gene Length | 1821 bp |
Protein Length | 606 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641275881 |
Product | glycoside hydrolase family protein |
Protein accession | YP_001541187 |
Protein GI | 159041935 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1449] Alpha-amylase/alpha-mannosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGTCTACG TGAGGGCTTT ACTTGATGTT GATAGCCCAG TGCATAAGGT GGGGGATGAG GTTGGGGTTA AGGTTAGGTT GATTAATGAT TCATCATCAT CAATAAACGT TAACATAACC CTCGACTACC TACTGGAGGG TAGGCACGTT AACTCATGGA CTGGTTCAGC CCTAGCACTA CCCGGTGAGG TGACTACGGT TAACGCATCA TTTACCGTGG GTGAGGCTGG GCTTTGGGTT ATTAGGCTTA ATGGTGACGC GGGGACTAGT AAATTCACTG AGTCAATTAA GGTGAGGGTT ATTGAGGGGA GGAGGCCGGT TAAATTAGCC TTAGTGTACC ACATGCATCA ACCCCCATGG TACATGAGTG ACGGCAGGTA TTACGCTGAT TGGGCATTCA GGTACGTTCA TGCCCCGGTT ATGGCACCCT TCTTCAACGG TGGCCCATAC TTATTCCACG CATTCCTCAA TGACAAGTAC AGTGGAGTTA AGGTGAATAT TCACTTATCC CCAAGCCTAC TTAAGCAGTG GGTTGATGCC ATTGAGAAGG GTTATACCCT CATTAATGGT GAAGTCCACG CAAAGGGTAG TGGTGAGGTT AATGCGGTGG CTAAGGTCCT TGATATGTAT AGGGTTCAGG CTAATAGGGG GCAGTTGGAT GTATTATCAA GCGTATACGC CCACACCATA CTGGGTTACT TAGCATCAAG GTACGAGATT ATTGACGTTA TTGATGAGGA ACTGGGCGTG GGTATGGAGG TTACTAAAAG TACCCTGGGT GTTAATCCCG TTGGTGTTTG GACTCCTGAA ATGGCGTGGA GTATGGAGTT GCTTGACATA TATGAGAAGC ATAAGGTCGG CTACACTGTG CTTGATGGTG GTAATCACTT CCCTGGGGTT CAGGGGGATA AGGGGAGTAT TTATGAACCC TATAGCCTGG GTGGTAGGTT AACAGTATTC TTTAGGGATG AGAGGTTAAG TAACATTTTA TCCTTCCAGA ATAATATCCC TGACGAGAGG TCTGCGGTGA AGCTTGCCGC AATGCTCAGT AGATCCATTA TTGAGACTAA TGGTGAATTA GTGGTCATTG CCCTTGATGG TGAGAACTTC ATAGCCATGT CCAAGACCCC GGCCATGGTT GGTTTAATGC TTGATAAATT CTACTCATAC CTCAGTAGAA TGCAGGAGTT AGGCATTATT GAGACTGTTA GGCTTAGTCA AGTTAACATG AGTAGGAGAA GCATAACCTA CATACCCACA ACCTCCTGGT TAGGGGGCTT CACTAAGTGG GATGGAGAGA GGAGGGAGCA TGCAGAGTAC TGGGTTAAGG TCATTGACTC ATACAGGTAC TTGAGGGGTC TTGAGGATGC ATTGGGTGGT AAGATTAATG AGGCTAGGTA CGCCCTATGG CATGCCCTAG ACAGTGACTT CTGGTGGGCT GAGTTCTGGA ATCCTGATTT AATTAACCAT TGGGTTGAGG AGTTCCGCAA TATCCTGGAT TCAAGGTTCA AGATAGCCAT GAGGCCCCTA AGGGAGGTTT ACAGGGGGCT TGTTAATAGG CCTATTGATG TGGAATTAGA GTTTGATAAT GACATGGGGG TTAACGTTAA GTTCAAGTTA ATTTGCCTAG ATACTCAACT GGATGTTGTT ATTCAGCCTG GTTCCTCAAG GATTAAGTGC AGTATAATAC CTAGGTTAGC CGGTTCCTAT AGGGTACCCA TATTCGTAAC CTCAGGTAAC TACATTTACC TACAATCCTA CGTAACCCTA AACGTCACCT ACGGTAATAG GGATCCACCT AATGAGGATT CAGCGGGATA G
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Protein sequence | MVYVRALLDV DSPVHKVGDE VGVKVRLIND SSSSINVNIT LDYLLEGRHV NSWTGSALAL PGEVTTVNAS FTVGEAGLWV IRLNGDAGTS KFTESIKVRV IEGRRPVKLA LVYHMHQPPW YMSDGRYYAD WAFRYVHAPV MAPFFNGGPY LFHAFLNDKY SGVKVNIHLS PSLLKQWVDA IEKGYTLING EVHAKGSGEV NAVAKVLDMY RVQANRGQLD VLSSVYAHTI LGYLASRYEI IDVIDEELGV GMEVTKSTLG VNPVGVWTPE MAWSMELLDI YEKHKVGYTV LDGGNHFPGV QGDKGSIYEP YSLGGRLTVF FRDERLSNIL SFQNNIPDER SAVKLAAMLS RSIIETNGEL VVIALDGENF IAMSKTPAMV GLMLDKFYSY LSRMQELGII ETVRLSQVNM SRRSITYIPT TSWLGGFTKW DGERREHAEY WVKVIDSYRY LRGLEDALGG KINEARYALW HALDSDFWWA EFWNPDLINH WVEEFRNILD SRFKIAMRPL REVYRGLVNR PIDVELEFDN DMGVNVKFKL ICLDTQLDVV IQPGSSRIKC SIIPRLAGSY RVPIFVTSGN YIYLQSYVTL NVTYGNRDPP NEDSAG
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