| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1221 |
|---|
| Symbol | |
|---|
| ID | 5709733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 1292535 |
|---|
| End bp | 1293413 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641275725 |
|---|
| Product | succinyl-CoA synthetase, alpha subunit |
|---|
| Protein accession | YP_001541038 |
|---|
| Protein GI | 159041786 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0074] Succinyl-CoA synthetase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR01019] succinyl-CoA synthetase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0392735 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.972662 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATAC TGGTTGACCA GAACACGAGG GTACTTGTAC AGGGAATAAC GGGTAGTGAG
GGATCTAGGC ACACACTGTA CATGCTTCAA TACGGCACTA AGGTGGTTGC TGGGGTAACA
CCAGGTAGGG GTGGTCAACA AGTTCACGGC GTCCCAGTCT ACGACTCAGT GGAGGAGGCC
TTAAGGAAAC ACCCTGAGAT AAACACATCA ATAATATTCG TACCAGCCAG GTTCGCCTCA
GATGCAGTCT ATGAGGCAGT GGATAATGGG ATAAGGCTGG TTGTAATAAT AACTGAACAC
ATTCCAATCC ATGATGCAAT AAGATTCGTT AACTACGCTA AGTATAAGGG GACGGTGATA
ATTGGGCCAA ACTGCCCAGG CGTGGTTAGT CCAACAATCA GTAAGGTGGG TATACTACCT
AATAATGTAT ACGTTAAGAA GGGGCCAGTG GGTATAATAT CCCGCAGCGG TACCTTAACC
TACGAAATAT CCTACCACTT AACCCAAGCC GGTTTCGGCC AAAGCACGGT GGTTGGTATT
GGCGGTGACC CAATAATAGG CACGGATATG GTTGAGGCAG CCTTAATGTA TGAGAATGAC
CCGGAGACCA AGTACTTAGT GGTGATTGGT GAAATAGGAG GTGACCAGGA GGAGAGGTTG
GCTAGCCTTG TTAGGGAGGG TAAGGTAACT AAGCCAATTG TAGCCTTCAT AGCCGGTAGA
ACAGCACCAC CGGGTAAGAG ACTTGGACAT GCCGGTGCAA TAATATCAAT GGGAGTCGGC
ACCTATGAGG GTAAGGTTAA GGCACTTGAG TCCGCCGGTA TTAAGGTCGC TAAGACACCG
CTTGAGGTTG TTAAGCTTAT TCGCGACATC TCAAAGTAA
|
|---|
| Protein sequence | MTILVDQNTR VLVQGITGSE GSRHTLYMLQ YGTKVVAGVT PGRGGQQVHG VPVYDSVEEA
LRKHPEINTS IIFVPARFAS DAVYEAVDNG IRLVVIITEH IPIHDAIRFV NYAKYKGTVI
IGPNCPGVVS PTISKVGILP NNVYVKKGPV GIISRSGTLT YEISYHLTQA GFGQSTVVGI
GGDPIIGTDM VEAALMYEND PETKYLVVIG EIGGDQEERL ASLVREGKVT KPIVAFIAGR
TAPPGKRLGH AGAIISMGVG TYEGKVKALE SAGIKVAKTP LEVVKLIRDI SK
|
|---|
| |