| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1187 |
|---|
| Symbol | lysS |
|---|
| ID | 5709266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 1245381 |
|---|
| End bp | 1246862 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641275689 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_001541004 |
|---|
| Protein GI | 159041752 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0922785 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.00801016 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTATAAGC CTCAATGGGA CCCGAATAGG TTAAGGATCG TGGAGGAGTT GAGGAGTAGG
GGTGTTAACC CGTATCCACA TAAATTTGAG ATTACCCACA CGATAAGTCA GATTAGGGAG
CTAGCTAAGA AGTACCCTAT TAGCCATGAT CCATTCCTTA AGGGTATTAG GACGGTGGGT
AGGGTGGCTA ACGTTAGGAG GCATGGTAAG GCTTCATTCG TTGATATTTT CGATGAGGGT
GAGAGGCTTC AACTCTACTT GAGGGTTAAT GAGCTTGGGG ATAGGTTTGA GGAGTTTCAT
AGATATGTGG ATAGGGGTGA TGTAATTGGG GTTGAGGGTG ACTTATTCTA CACGCTTAAG
GGTGAGTTAA CGCTACTGGT TCATGATTAC GCATTATTGG CTAAGGCGCT CCTTGAGCCA
CCTGACTGGA GTAAATACAC CACTGAGTGG AGGTATACGC ATAGGTACCT TGACTTCCTC
TATAATAGTG AGGCTAGGAG GATTATTCAA ACCAGGTTCA GGATTATTCA AGCCATTAGG
GAGTTCTTGA ATTCAATGGG GTTCATGGAG GTTGAAACCC CAATACTTCA ACCAGTCTAC
GGTGGTGCCT TGGCTAAGCC CTTTAAGACT CATGTTAATG CCCTTGATGA GGACTGGTAC
CTTAGGATTA GCCTTGAACT TTACTTGAAG AGGTTCATAA TTGGGGGTTT CAATAAGGTT
TACGAGATTG GTAAAGTCTT CAGGAATGAG GACATTGATG TTTACCATAA CCCGGAATTC
ACAATGCTTG AATTATACTG GGCCTACGCG GACTACAATG ATATCATGAG GCTTACGGAG
GATTTGATTC ATCAAGTGGC AGTGAAGGTT ACTGGTAAGG ACATGGTGGA GTACCCTATA
GGTGAAGGTA AGGTTGAGGT TAAGTTAACT ACACCGTTCA GGAGACTAAC AATGTATGAG
GCCTTAAGTA ATGAGCTGGG TAAGAACGTT GAGTCAATGA GTGATGATGA GTTGAGGAGA
TTAATGAATG AGAATGGGCT GGTACCTAGG GGTGGGCAGT ACGTTAGGGG GCTTATGATT
GAGAAGCTAT TTGATAAATT AGTGGCACCT AAGTTAATTC AACCAACCTT CATTACTGAT
TACCCACAGG AGACTACACC ATTATGTAAG CCACATAGGT CTAAGCCAGG CTTAATAGAG
AGGTTTGAAT TATACATTGC CGGAATGGAG CTGGCCAACG CCTACACTGA GCTTAATGAT
CCCCAGCTAC AGCACAAGTT CTTCGAGGAG GAGGCTGAAC GCTTCAAGGG AGGTGACGAG
GAGGCGCATC CCTACGACTA CGACTTCGTC CTGGCCCTAA GCTACGGAAT GCCACCAACA
GGTGGATTAG GCATAGGCAT TGATAGGCTA GTAATGGTGC TGACTGGGCA ATACTCCATT
AAGGAAGTAA TACCATTCCC AATGGTAAAA CATAATCCTT AA
|
|---|
| Protein sequence | MYKPQWDPNR LRIVEELRSR GVNPYPHKFE ITHTISQIRE LAKKYPISHD PFLKGIRTVG
RVANVRRHGK ASFVDIFDEG ERLQLYLRVN ELGDRFEEFH RYVDRGDVIG VEGDLFYTLK
GELTLLVHDY ALLAKALLEP PDWSKYTTEW RYTHRYLDFL YNSEARRIIQ TRFRIIQAIR
EFLNSMGFME VETPILQPVY GGALAKPFKT HVNALDEDWY LRISLELYLK RFIIGGFNKV
YEIGKVFRNE DIDVYHNPEF TMLELYWAYA DYNDIMRLTE DLIHQVAVKV TGKDMVEYPI
GEGKVEVKLT TPFRRLTMYE ALSNELGKNV ESMSDDELRR LMNENGLVPR GGQYVRGLMI
EKLFDKLVAP KLIQPTFITD YPQETTPLCK PHRSKPGLIE RFELYIAGME LANAYTELND
PQLQHKFFEE EAERFKGGDE EAHPYDYDFV LALSYGMPPT GGLGIGIDRL VMVLTGQYSI
KEVIPFPMVK HNP
|
|---|
| |