Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cmaq_0973 |
Symbol | |
ID | 5708735 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Caldivirga maquilingensis IC-167 |
Kingdom | Archaea |
Replicon accession | NC_009954 |
Strand | + |
Start bp | 1022578 |
End bp | 1025136 |
Gene Length | 2559 bp |
Protein Length | 852 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641275474 |
Product | AAA family ATPase, CDC48 subfamily protein |
Protein accession | YP_001540795 |
Protein GI | 159041543 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0464] ATPases of the AAA+ class |
TIGRFAM ID | [TIGR01243] AAA family ATPase, CDC48 subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0684344 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTAACG GTGAAGATTC ATTAACACTT CGTGTGGCAG AGGCTAGGAG TCGTGATGTT GGTAGAGGTA TTGTTAGGGT ACCTATGAGA TTAATGAGGA AGATAGGTAT TGAGCCTGGT GACTACGTTG AGATAAGTGG TAATAAGCGT ATAGCCTATG CCCAGGTTTG GCCGGCTTAC AGTGATGATG AGGATAAGGA CATTATAAGG ATGGATGGTT TCATTAGACA GAACATTGAT GTTTCACTGG ATGACTTAGT TAAGGTTAGG AAAGCTAACC TAAGGCCGGC GCAAAGAGTA ACAGTAGCCC CAGTGGGTGA GGAGATTAAG ATTGATCCAG ATTACTTGAA GAAATCATAC CTAGTTGGTA AGCCAGTGTG GCGTGGTGCA ATATTCGAAC TACCCTACTA TACTGGTGCA TTAAAATTCA TGATAACTCA AGTAATCCCA GCCCCAGCAG CCTACGTTGG CACTGAGACT GAGGTTACGA TGCAGGATAA GCCAGTTCAG GAAACTAACC TGCCTCGTGT TACTTGGGAG GATATTGGTG ATTTGGAGGA GGCTAAGCAG AAGATTCGTG AGCTTGTGGA GTTGCCTCTT AAGCATCCTG AGTTGTTTAG GCATCTTGGT ATTGAGCCCC CTAAGGGTGT TTTACTAATT GGCCCACCCG GTACTGGTAA GACTCTCTTG GCTAAGGCTG TTGCCAATGA GGCTGATGCG TACTTCGTCT CCATTAATGG TCCTGAGATT GTTAGTAAGT ATTACGGTGA GTCTGAGGCT AGGTTGAGGG AGATTTTCGA TGAGGCTAAG CGTAATGCAC CAGCAATAAT ATTCATTGAT GAAATAGACA GCATAGCACC AAAACGCGAG GAGGTGACTG GTGAGGTGGA GAAGCGCATA GTGGCCCAAT TACTAACACT AATGGATGGT TTACAGGAGA GGGGTCAAGT AGTTGTTATA GGAGCAACGA ATAGACCGGA TGCAGTGGAC CCAGCATTAA GAAGACCAGG AAGATTCGAC AGAGAGATAA ACATAGGCAT GCCTGATAAG AGGGCTAGGT TAGACATATT ATCCATACAC ACCAGGGGTG TTCCATTATG CACTCCCGAC GATGTGTCTA ACTGCAAGGG TGATAATTGC CCATGTAAAC GTGGTGATGA GGTTGACTTA GAGAAGATAG CCGATATGAC GCATGGCTAC ACTGGGGCGG ATATAGCGGC GTTGGTTAAG GAGGCTGCAA TGACTAGGCT TAGGAAGTTC CTTAACCAGA ATGGTAAGGC CATAGACCTA GATAGACCGA TACCCACAGA CATGTTGAAC ATGATTAAGG TTACTATGCA GGACTTCATG GATGCTATGA AGTACATTCA ACCCACAGTA TTAAGGGAAG TTATTGTTGA GGTTCCTGAG GTTCACTGGG ATGACATTGG AGGCTACGCT AGCGTTAAGC AGGAGCTTAG GGAGACTGTT GAATGGCCTA TTAAGTATAG GGTTTACTTC GATGAATTAG GCGTTGAACC ACCTAAGGGT ATTTTGTTGT TTGGTCCTCC TGGTACTGGT AAGACTCTCT TGGCTAAGGC TGTTGCCAAT GAGAGTGGTG CAAACTTCAT AGCCGTCCGT GGCCCTGAAA TACTGAGTAA GTGGTTTGGT GAGAGTGAGA AGGCTATTAG GGAAATATTC AAGAAAGCCA GAATGGCAGC ACCATGCGTA GTATTCTTCG ACGAAATAGA CGCAATAGCA CCAGCAAGAG GATACAGGAT AGACAGTGGA GCCACTGATA GGATAGTTAA TCAGATACTT GCCGAGATGG ATGGAATAGC GCCACTACGC AACGTAGTTG TGATAGCAGC CACTAATAGA CCTGATATCC TTGATCCAGC ATTACTAAGA CCAGGAAGAT TCGACAGAAT AATATACGTA CCACCACCGG ATAAGGAGGC TATACTTGAG ATCTTTAAGG TGCATACTAG GCATATTAAA CTCTCCAGTG AAGTTAATGT GCAGGAATTA GCGGACTCCA TTAGGGTTAA GTCCATTGAG AAGGCTTTAA CGCAACTCAA TATTAGGGCA CATGAGTTTA AGACTAAGGT CACCGATGCT GTTGAATCCG CCTTAACTGA GCTTGATAGC AGTGATATTA AACAGGGTGA TAAGGCTAAG TTAATTGAGG CGTTAAATAA TGTGAAGTCA ATGCTAAGTA ATGGTGAATT CAAGGGCAGT AAGGGGTTAA GGACAATGAT TGATGTTGTT AAGATTCTAG TTGATGTGTT TGAAACAGCA ACACTAGGGC AGGTTGACAG TGGGCTTGAA TCCCTCAGGG AGTTTAAACT ATACGCCTCC CTATACACTG GAGCTGACAT AGCCGCTATT GTTAGGGAGG CATCAATGAT GGCTTTAAGG GAGGCAATAA CCTCAACGAA GACGCCATCT GATGTGGCAG TGACCATGAG GCACTTCCAA ATAGCCTTCC AGAGGGTTCA ACCATCGCTA AGTGTTGAGG TGCTTAGGAA GTATGATGAA ATGTCCAGGA TGCTGAGTAG AGTAATCAGG GGTCTATAA
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Protein sequence | MANGEDSLTL RVAEARSRDV GRGIVRVPMR LMRKIGIEPG DYVEISGNKR IAYAQVWPAY SDDEDKDIIR MDGFIRQNID VSLDDLVKVR KANLRPAQRV TVAPVGEEIK IDPDYLKKSY LVGKPVWRGA IFELPYYTGA LKFMITQVIP APAAYVGTET EVTMQDKPVQ ETNLPRVTWE DIGDLEEAKQ KIRELVELPL KHPELFRHLG IEPPKGVLLI GPPGTGKTLL AKAVANEADA YFVSINGPEI VSKYYGESEA RLREIFDEAK RNAPAIIFID EIDSIAPKRE EVTGEVEKRI VAQLLTLMDG LQERGQVVVI GATNRPDAVD PALRRPGRFD REINIGMPDK RARLDILSIH TRGVPLCTPD DVSNCKGDNC PCKRGDEVDL EKIADMTHGY TGADIAALVK EAAMTRLRKF LNQNGKAIDL DRPIPTDMLN MIKVTMQDFM DAMKYIQPTV LREVIVEVPE VHWDDIGGYA SVKQELRETV EWPIKYRVYF DELGVEPPKG ILLFGPPGTG KTLLAKAVAN ESGANFIAVR GPEILSKWFG ESEKAIREIF KKARMAAPCV VFFDEIDAIA PARGYRIDSG ATDRIVNQIL AEMDGIAPLR NVVVIAATNR PDILDPALLR PGRFDRIIYV PPPDKEAILE IFKVHTRHIK LSSEVNVQEL ADSIRVKSIE KALTQLNIRA HEFKTKVTDA VESALTELDS SDIKQGDKAK LIEALNNVKS MLSNGEFKGS KGLRTMIDVV KILVDVFETA TLGQVDSGLE SLREFKLYAS LYTGADIAAI VREASMMALR EAITSTKTPS DVAVTMRHFQ IAFQRVQPSL SVEVLRKYDE MSRMLSRVIR GL
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