Gene Cmaq_0973 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCmaq_0973 
Symbol 
ID5708735 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCaldivirga maquilingensis IC-167 
KingdomArchaea 
Replicon accessionNC_009954 
Strand
Start bp1022578 
End bp1025136 
Gene Length2559 bp 
Protein Length852 aa 
Translation table11 
GC content45% 
IMG OID641275474 
ProductAAA family ATPase, CDC48 subfamily protein 
Protein accessionYP_001540795 
Protein GI159041543 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0464] ATPases of the AAA+ class 
TIGRFAM ID[TIGR01243] AAA family ATPase, CDC48 subfamily 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0684344 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTAACG GTGAAGATTC ATTAACACTT CGTGTGGCAG AGGCTAGGAG TCGTGATGTT 
GGTAGAGGTA TTGTTAGGGT ACCTATGAGA TTAATGAGGA AGATAGGTAT TGAGCCTGGT
GACTACGTTG AGATAAGTGG TAATAAGCGT ATAGCCTATG CCCAGGTTTG GCCGGCTTAC
AGTGATGATG AGGATAAGGA CATTATAAGG ATGGATGGTT TCATTAGACA GAACATTGAT
GTTTCACTGG ATGACTTAGT TAAGGTTAGG AAAGCTAACC TAAGGCCGGC GCAAAGAGTA
ACAGTAGCCC CAGTGGGTGA GGAGATTAAG ATTGATCCAG ATTACTTGAA GAAATCATAC
CTAGTTGGTA AGCCAGTGTG GCGTGGTGCA ATATTCGAAC TACCCTACTA TACTGGTGCA
TTAAAATTCA TGATAACTCA AGTAATCCCA GCCCCAGCAG CCTACGTTGG CACTGAGACT
GAGGTTACGA TGCAGGATAA GCCAGTTCAG GAAACTAACC TGCCTCGTGT TACTTGGGAG
GATATTGGTG ATTTGGAGGA GGCTAAGCAG AAGATTCGTG AGCTTGTGGA GTTGCCTCTT
AAGCATCCTG AGTTGTTTAG GCATCTTGGT ATTGAGCCCC CTAAGGGTGT TTTACTAATT
GGCCCACCCG GTACTGGTAA GACTCTCTTG GCTAAGGCTG TTGCCAATGA GGCTGATGCG
TACTTCGTCT CCATTAATGG TCCTGAGATT GTTAGTAAGT ATTACGGTGA GTCTGAGGCT
AGGTTGAGGG AGATTTTCGA TGAGGCTAAG CGTAATGCAC CAGCAATAAT ATTCATTGAT
GAAATAGACA GCATAGCACC AAAACGCGAG GAGGTGACTG GTGAGGTGGA GAAGCGCATA
GTGGCCCAAT TACTAACACT AATGGATGGT TTACAGGAGA GGGGTCAAGT AGTTGTTATA
GGAGCAACGA ATAGACCGGA TGCAGTGGAC CCAGCATTAA GAAGACCAGG AAGATTCGAC
AGAGAGATAA ACATAGGCAT GCCTGATAAG AGGGCTAGGT TAGACATATT ATCCATACAC
ACCAGGGGTG TTCCATTATG CACTCCCGAC GATGTGTCTA ACTGCAAGGG TGATAATTGC
CCATGTAAAC GTGGTGATGA GGTTGACTTA GAGAAGATAG CCGATATGAC GCATGGCTAC
ACTGGGGCGG ATATAGCGGC GTTGGTTAAG GAGGCTGCAA TGACTAGGCT TAGGAAGTTC
CTTAACCAGA ATGGTAAGGC CATAGACCTA GATAGACCGA TACCCACAGA CATGTTGAAC
ATGATTAAGG TTACTATGCA GGACTTCATG GATGCTATGA AGTACATTCA ACCCACAGTA
TTAAGGGAAG TTATTGTTGA GGTTCCTGAG GTTCACTGGG ATGACATTGG AGGCTACGCT
AGCGTTAAGC AGGAGCTTAG GGAGACTGTT GAATGGCCTA TTAAGTATAG GGTTTACTTC
GATGAATTAG GCGTTGAACC ACCTAAGGGT ATTTTGTTGT TTGGTCCTCC TGGTACTGGT
AAGACTCTCT TGGCTAAGGC TGTTGCCAAT GAGAGTGGTG CAAACTTCAT AGCCGTCCGT
GGCCCTGAAA TACTGAGTAA GTGGTTTGGT GAGAGTGAGA AGGCTATTAG GGAAATATTC
AAGAAAGCCA GAATGGCAGC ACCATGCGTA GTATTCTTCG ACGAAATAGA CGCAATAGCA
CCAGCAAGAG GATACAGGAT AGACAGTGGA GCCACTGATA GGATAGTTAA TCAGATACTT
GCCGAGATGG ATGGAATAGC GCCACTACGC AACGTAGTTG TGATAGCAGC CACTAATAGA
CCTGATATCC TTGATCCAGC ATTACTAAGA CCAGGAAGAT TCGACAGAAT AATATACGTA
CCACCACCGG ATAAGGAGGC TATACTTGAG ATCTTTAAGG TGCATACTAG GCATATTAAA
CTCTCCAGTG AAGTTAATGT GCAGGAATTA GCGGACTCCA TTAGGGTTAA GTCCATTGAG
AAGGCTTTAA CGCAACTCAA TATTAGGGCA CATGAGTTTA AGACTAAGGT CACCGATGCT
GTTGAATCCG CCTTAACTGA GCTTGATAGC AGTGATATTA AACAGGGTGA TAAGGCTAAG
TTAATTGAGG CGTTAAATAA TGTGAAGTCA ATGCTAAGTA ATGGTGAATT CAAGGGCAGT
AAGGGGTTAA GGACAATGAT TGATGTTGTT AAGATTCTAG TTGATGTGTT TGAAACAGCA
ACACTAGGGC AGGTTGACAG TGGGCTTGAA TCCCTCAGGG AGTTTAAACT ATACGCCTCC
CTATACACTG GAGCTGACAT AGCCGCTATT GTTAGGGAGG CATCAATGAT GGCTTTAAGG
GAGGCAATAA CCTCAACGAA GACGCCATCT GATGTGGCAG TGACCATGAG GCACTTCCAA
ATAGCCTTCC AGAGGGTTCA ACCATCGCTA AGTGTTGAGG TGCTTAGGAA GTATGATGAA
ATGTCCAGGA TGCTGAGTAG AGTAATCAGG GGTCTATAA
 
Protein sequence
MANGEDSLTL RVAEARSRDV GRGIVRVPMR LMRKIGIEPG DYVEISGNKR IAYAQVWPAY 
SDDEDKDIIR MDGFIRQNID VSLDDLVKVR KANLRPAQRV TVAPVGEEIK IDPDYLKKSY
LVGKPVWRGA IFELPYYTGA LKFMITQVIP APAAYVGTET EVTMQDKPVQ ETNLPRVTWE
DIGDLEEAKQ KIRELVELPL KHPELFRHLG IEPPKGVLLI GPPGTGKTLL AKAVANEADA
YFVSINGPEI VSKYYGESEA RLREIFDEAK RNAPAIIFID EIDSIAPKRE EVTGEVEKRI
VAQLLTLMDG LQERGQVVVI GATNRPDAVD PALRRPGRFD REINIGMPDK RARLDILSIH
TRGVPLCTPD DVSNCKGDNC PCKRGDEVDL EKIADMTHGY TGADIAALVK EAAMTRLRKF
LNQNGKAIDL DRPIPTDMLN MIKVTMQDFM DAMKYIQPTV LREVIVEVPE VHWDDIGGYA
SVKQELRETV EWPIKYRVYF DELGVEPPKG ILLFGPPGTG KTLLAKAVAN ESGANFIAVR
GPEILSKWFG ESEKAIREIF KKARMAAPCV VFFDEIDAIA PARGYRIDSG ATDRIVNQIL
AEMDGIAPLR NVVVIAATNR PDILDPALLR PGRFDRIIYV PPPDKEAILE IFKVHTRHIK
LSSEVNVQEL ADSIRVKSIE KALTQLNIRA HEFKTKVTDA VESALTELDS SDIKQGDKAK
LIEALNNVKS MLSNGEFKGS KGLRTMIDVV KILVDVFETA TLGQVDSGLE SLREFKLYAS
LYTGADIAAI VREASMMALR EAITSTKTPS DVAVTMRHFQ IAFQRVQPSL SVEVLRKYDE
MSRMLSRVIR GL