Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cmaq_0551 |
Symbol | |
ID | 5710463 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Caldivirga maquilingensis IC-167 |
Kingdom | Archaea |
Replicon accession | NC_009954 |
Strand | - |
Start bp | 583224 |
End bp | 583988 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 641275054 |
Product | bacterio-opsin activator |
Protein accession | YP_001540384 |
Protein GI | 159041132 |
COG category | [R] General function prediction only |
COG ID | [COG3413] Predicted DNA binding protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.199314 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTATGACA CTGAGGCATT AATGTTACTT AATGGTTTAC TTAACTCACC TAGGTTAGTT TACCTAGATT ACTATCATTA CTCAGACTGG ACTGTTAAGG TTTCTGAACT TAACCTTGAG TATAGGGTTT TAAGCAGTTT CGTTGACTCC TCTTCACCAT TCATAGTGGA GTATGCTCTG GTGAGGGTTG GTAGTAGGCT TGACTTTAAG AATTTCCTTA AGACCTTGAA TAGTCATAGG AATGTCTTAA GTATTGATGA TGTTAAACCC ATTAACTCCA CTTACCCTAG GTTAATTAGA ATGGTTGTTA GGGGTGATTA CGCGGACTCC ACTAGGTTTA AGGCTCACAT TCTTGGTGGT TTAGAGATAG GGTACAGTAC CAGTGGTGGT GTTGAGCATT GGGTCTTCCT GTTCCCGAGT AGTAAGGCTG TTGACATGTT TATAGGGATT ATTAGTGGTA ATGGTGAGGT GGGTAGAGTA AGGGAGAGTG CGGTGAATCC TGAGGATGTG GTGGCAGCCA TAGTGAGGAG TAAGGTTAAG GTACTGTTGA GTAGTGATGA GGAGAAGTTG TTAAGGATAG CTCATGAGAA TGGGTTATTT GATACGCCGA GGAGGATAAC GGTAAGGCAG TTGGCTAAGG AATTGGGTGT GAGTGAATCA ACATTATCCA GGAATTTAAG TAGAGTAATT AAGAGGGTGC TGAACATTAT AATTAATGAT GAATTCAATC CATTAGATGA TGAAACACTT CGCTTCACTC CTTAA
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Protein sequence | MYDTEALMLL NGLLNSPRLV YLDYYHYSDW TVKVSELNLE YRVLSSFVDS SSPFIVEYAL VRVGSRLDFK NFLKTLNSHR NVLSIDDVKP INSTYPRLIR MVVRGDYADS TRFKAHILGG LEIGYSTSGG VEHWVFLFPS SKAVDMFIGI ISGNGEVGRV RESAVNPEDV VAAIVRSKVK VLLSSDEEKL LRIAHENGLF DTPRRITVRQ LAKELGVSES TLSRNLSRVI KRVLNIIIND EFNPLDDETL RFTP
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