Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cmaq_0113 |
Symbol | |
ID | 5708886 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Caldivirga maquilingensis IC-167 |
Kingdom | Archaea |
Replicon accession | NC_009954 |
Strand | + |
Start bp | 138035 |
End bp | 139276 |
Gene Length | 1242 bp |
Protein Length | 413 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641274619 |
Product | diaminopimelate aminotransferase |
Protein accession | YP_001539957 |
Protein GI | 159040705 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | [TIGR01910] acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.239854 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 55 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCAGG ATAAGCCTGA TTTAAGTAGG GTAATGAGTA AGGTGGGTGA ATTAAGGGAA TTCATTATTA ACCTATACAA GGACTTCATA CCGATAAGGG CACTTGCCCC TGAGAATGGG GGCGATGGGG AGTGGGATAG GGCCCAGTAC TTAATTAATG TTGCCAGGCA GTATTTTGAT GATGTTAAGG TTATTGAGGC ACCTGACCCT AGGGTGAGTA GGGGTTCAAG ACCTAACGTG GTGGCTACCA TTAAGGGGAT TGATGAATCT AGGACCTTCT GGGTAATAGC GCATATGGAT ACTGTACCAG AGGGTGATAG AGCCCTGTGG AGTGTTGAGC CTTATCAAGC GACTGTTAAG GGGGATTTAG TGTATGGTAG GGGTGTTGAG GATAATGGTC AAGGCATAGT AATGGGCTTA GCCGTGGGTA AGGTTTTAAG GGATTTAGGC ATTAAACCAC CATTCAACTA TGGCCTAATA CTGGCCAGTG ATGAGGAGGT GGGGAGTAAG TATGGGATAA GGTACATACT GGATACTGAG AGGGATTTAT TTAAGGCCAG TGACCTTATC CTCGTACCTG ATGCAGGGAA TCCCGATGGA TCAATGATTG AGATAGCTGA GAAGGCAATA CTTTGGTTAA GGATTACTAT TACTGGTAAG CAGGGCCATG CCAGTGTCCC TGAGTCGGCC TTGAATGCCC ATAGGTTAGG CATGATGCTT GCCCTTAAGC TTGATGAAGT GCTTCACAGT ACCTATAATG CCGAGGACCC ATTATTCACG CCACCTGAGT CAACCTTTGA ACCCACTAGG GTTGATAAGA ATGTGGATAA CGTTAACACT ATACCCGGTA GACACGTGTT CTACTTCGAC TGCAGGGTGT TACCTAGGTA TAGTCTTGAT GATGTCTTAG CCACGGTCAA TAAGACTGCT GAGGAATTCT GCAGGGAGAA AGGCTGCGGA TTCAGTGTTG AGGTTTTGAA TAGGGATGAC CCAGCACCCC CCACTAGTCC TAATAGTGAA GTTGTTCAGA GGCTTACTAG GGCTATTAAG ATGATTAGGA ACATTGATGT TAAGTACATG GGTATTGGGG GAGGCACGTA TGCTAAGTAC ATTAGGATGC TGGGTATTCC TGTGGCAGTC TGGATGACTT CAAGTAATAC TGCGCATTCC CCCGATGAGC GCGTTAACTT AAACGACGTC ATAAATGATG TTAAGGTTAC TTTAGCATCA ATGATGATTT AA
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Protein sequence | MTQDKPDLSR VMSKVGELRE FIINLYKDFI PIRALAPENG GDGEWDRAQY LINVARQYFD DVKVIEAPDP RVSRGSRPNV VATIKGIDES RTFWVIAHMD TVPEGDRALW SVEPYQATVK GDLVYGRGVE DNGQGIVMGL AVGKVLRDLG IKPPFNYGLI LASDEEVGSK YGIRYILDTE RDLFKASDLI LVPDAGNPDG SMIEIAEKAI LWLRITITGK QGHASVPESA LNAHRLGMML ALKLDEVLHS TYNAEDPLFT PPESTFEPTR VDKNVDNVNT IPGRHVFYFD CRVLPRYSLD DVLATVNKTA EEFCREKGCG FSVEVLNRDD PAPPTSPNSE VVQRLTRAIK MIRNIDVKYM GIGGGTYAKY IRMLGIPVAV WMTSSNTAHS PDERVNLNDV INDVKVTLAS MMI
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