Gene Clim_2504 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_2504 
SymbolmurD 
ID6355123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand
Start bp2742903 
End bp2744300 
Gene Length1398 bp 
Protein Length465 aa 
Translation table11 
GC content52% 
IMG OID642670092 
ProductUDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 
Protein accessionYP_001944501 
Protein GI189347972 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase 
TIGRFAM ID[TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0034683 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATGTAC ATGGCAAAAA AGCATCGATT ATCGGTGCAA AACGGAGCGG TGTCGCTGCA 
GCGGAATTGC TTGCAAAGAG CGGCGCAAAG GTGTTCGTGA GCGAACTTGG TGAGCCGGGA
GCTTCCGAAG CGGAGCGTCT TGCCGATTGT GGCATTCCCT GGGAGCAGGA TGGGCATACC
GACAGGGTTT GCGATGCGGA TTTTTGTGTC GTCAGTCCAG GCATTCCCCG AACAGCAGGA
ATTATCCGGC GGGTCCTTGA ACAGGGCATT CCTCTTTACA GTGAGATCGA GGCCGCGAGC
TGGTTCTGCA AGGCAAGAAT TGCAGGTATT ACCGGAACGG ACGGCAAGAC CACCACGTCC
ACGCTTCTGC ACCGCATAGC TGAAGCCGAT GGCATGAAAA ACGACTACAG GGCTTTCAGC
GTCGGAAACA TCGGTGTGCC GTTTTCTTCT CTGGTGCTGG ATATGGCTCC CGCTGATCTT
GCGGTTGTCG AGTTGAGCAG TTATCAGCTT GAAGGCTGTG AAACCTTCAG GCCGGATGTT
TCGGTTATCA CGAACATCAC TCCCGATCAT CTCGATCGTT ATAACGGCGA TATGCAGTTG
TATGCCGCAG CAAAATTCAG GATTTACGCT TCACAGCGCG CCTCGGATAC TCTGGTGTAC
AATTTTGACG ACCCGTTGCT CCGGGCTCAA TTCAGCGGAA ATGGCAGGGG ATTTCCTTTT
CGTATCGTTC CGTTCGGCAT CGGTAACGAT GTGCCCGGAT CCGGTTCGGA GGAGGCATTC
TTTTATGACG AAGGGATGAT TCGGCATTTG ACCGCAAAAG GGATTTCGGA GGTTTTTTCG
GGGGAGGATT TTCTGAAAAG CAGTTTCAGG GGCCGTCATA ACATCTATAA TGCCCTTGCT
GCGCTTGCTG CGGCCGCAGC GCTCGGCATT GAAGAGAGCG TTGCCCGCAA GGCGATTTCA
GGGTTTTCCG GCGTTGAGCA TCGACAGGAG TTCGTGTGCT CTCTTGACGG AGTCGAATGG
ATCAATGATT CGAAGGCAAC CAATGTCAAT GCGCTTCTGC AGGCGCTCGA TGCCGTTCCG
GGCAGTATTG TTCTGATTGC GGGAGGAAGG GATAAAGGGA ACGATTATAC GGTTCTTTTC
GATGTCGTTC GGCGGAAAGT AGTGACGGTG ATTGCCATAG GAGAAGCAAG AGAAAAGATT
TTACAGGTAT TTGAGGGGAT AACCCGTACT GCAGGAGCTG ATACTCTCGA TGACGCGGTA
GCTCTCGCAC GGGAATCTGC CGAAAAAGGC CAGACGGTGC TTTTTTCTCC CGGCTGTGCC
AGTTTCGATA TGTTTGAGAA TTTTGAAGAA CGGGGGCGAC TTTTCAAGCG CTCTATTCTT
GCTTTGAACC CATGTTGA
 
Protein sequence
MDVHGKKASI IGAKRSGVAA AELLAKSGAK VFVSELGEPG ASEAERLADC GIPWEQDGHT 
DRVCDADFCV VSPGIPRTAG IIRRVLEQGI PLYSEIEAAS WFCKARIAGI TGTDGKTTTS
TLLHRIAEAD GMKNDYRAFS VGNIGVPFSS LVLDMAPADL AVVELSSYQL EGCETFRPDV
SVITNITPDH LDRYNGDMQL YAAAKFRIYA SQRASDTLVY NFDDPLLRAQ FSGNGRGFPF
RIVPFGIGND VPGSGSEEAF FYDEGMIRHL TAKGISEVFS GEDFLKSSFR GRHNIYNALA
ALAAAAALGI EESVARKAIS GFSGVEHRQE FVCSLDGVEW INDSKATNVN ALLQALDAVP
GSIVLIAGGR DKGNDYTVLF DVVRRKVVTV IAIGEAREKI LQVFEGITRT AGADTLDDAV
ALARESAEKG QTVLFSPGCA SFDMFENFEE RGRLFKRSIL ALNPC